Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6 122 1e-22 seq1 109 9e-19 seq854 100 4e-16 >seq6 Length=97571839 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||| | |||||||| || ||||| |||| || || | Sbjct 19649334 TGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGTG 19649393 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| |||| ||||| ||| |||||||| ||||| || ||||||| Sbjct 19649394 ACACCATTGACAATGTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAAC 19649453 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | |||||||| || |||||| | || ||| | |||| | || |||||||| | Sbjct 19649454 AAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATAACA 19649513 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || || ||||| ||| ||||| | || || || | | |||||| Sbjct 19649514 TTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGAGGT 19649560 >seq1 Length=110538649 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || ||||| || ||||||||||| || | || || || | Sbjct 86551309 TGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCTCGG 86551250 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || || ||||| ||| ||| ||||| |||||||| || |||| Sbjct 86551249 ACACTATTGATAACGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAAC 86551190 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || |||||||| || || ||||| || ||| | || | |||||||||||| Sbjct 86551189 AAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAATA 86551130 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || || |||| |||| Sbjct 86551129 TTCAAAAGGAGTCAACGCTCCACCTAGT 86551102 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| || |||||||| || ||||| |||| || || | || Sbjct 14109965 TGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCCG 14110024 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| |||||| || ||||||||||||||| || ||||| | Sbjct 14110025 ATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAGC 14110084 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || || || || || ||| | || ||| | | || | | || || |||| Sbjct 14110085 AGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACAATA 14110144 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| ||||| Sbjct 14110145 TTCAGAAGGAATCCACTCTCCAT 14110167 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 146090 CGATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCA 146149 |||||| ||| | ||||| || || ||||| ||| || || || ||||| || || Sbjct 86550797 CGATACCATTGATAATGTGAAGGCCAAGATACAGTATAAGGAGGGTATCCCACCAGACCA 86550738 Query 146150 ACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAA 146209 |||||| | ||||||||||| ||||||||||| ||| ||||| || | |||||||| Sbjct 86550737 GCAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGAAGAACTCTAGCTGATTATAA 86550678 Query 146210 TATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||| || ||||| |||| |||| Sbjct 86550677 CATTCAAAAGGAGTCGACACTCCACCTAGT 86550648 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| ||||| |||||||| || || | || || ||| | | Sbjct 85489189 TGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGGAAGTTGAAAACTCAG 85489248 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||||| ||| || || || |||||||| ||||| | Sbjct 85489249 ACACGATAGATAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTATTCCACCGGATCAGC 85489308 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||| || ||||| || ||| | || | |||||||||||| Sbjct 85489309 AGAGGCTGATATTTGCAGGGAAGCAATTGGAAGATGGGCGTACACTCGCAGATTATAATA 85489368 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | ||||| || || ||| |||| Sbjct 85489369 TTCAAAAGGAGTCAACTCTCCA 85489390 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| ||| | ||||| ||||||||||| || || || | || || || | | | Sbjct 85490329 TGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTCA- 85490387 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| || || ||||| ||| || || |||||||| || ||| Sbjct 85490388 GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATTCCACCGGACCAA 85490447 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || ||||| || || || || || ||| ||| || || | ||||| ||| Sbjct 85490448 CAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACATTGGCTGATTACAAT 85490507 Query 146211 ATACAAAAAGAATCGACTATCCAT 146234 || || || || || ||| ||||| Sbjct 85490508 ATCCAGAAGGAGTCTACTCTCCAT 85490531 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || ||||| ||| || || || ||||| || || Sbjct 85489932 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAG 85489991 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||||| ||||||||||| |||||||| || ||| || || | ||||||||||| Sbjct 85489992 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTTGCAGATTATAAT 85490051 Query 146211 ATACAAAAAGAATCGAC 146227 || ||||| ||||| || Sbjct 85490052 ATTCAAAAGGAATCCAC 85490068 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||| || | || || || | Sbjct 85490101 TGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 85490160 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||||| ||| || |||||||||||||| ||||| | Sbjct 85490161 ACACGATAGACAATGTTAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATCAGC 85490220 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || |||||||| || || || || | | || ||||| | Sbjct 85490221 AGAGGCTGATTTTTGCTGGGAAACAATTGGAAGACGGGAGGACTCTTGCTGACTATAACA 85490280 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || || |||| |||| Sbjct 85490281 TTCAAAAGGAGTCAACACTCCACCTAGT 85490308 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||| | || | ||||| || || ||||||||||| || | || || ||| | Sbjct 85489417 TGCAAGTTTTTGTTAAAACCTTGACTGGAAAAACAATCACATTGGAAGTCGAAAGCTCGG 85489476 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| ||| ||| ||||| |||||||| ||||||| Sbjct 85489477 ACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAAC 85489536 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || |||||||| ||||| | || ||| | || | | ||||| |||| Sbjct 85489537 AACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGGCGTACTCTCGCGGATTACAATA 85489596 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | ||||| || || || |||| Sbjct 85489597 TTCAAAAGGAGTCAACACTCCA 85489618 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||||| ||||| ||||| || || |||| || || | Sbjct 14110421 TGCAGATCTTTGTGAAGACATTGACAGGGAAAACTATCACCCTTGAAGTTGAGAGCTCGG 14110480 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || |||||| ||| || ||||| || ||||| || || | Sbjct 14110481 ACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAGGAAGGAATCCCACCTGACCAGC 14110540 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||||||||| || || | || || || || | | |||||||| | Sbjct 14110541 AGAGGTTGATTTTTGCAGGGAAGCAGCTTGAGGACGGGAGGACTCTTGCTGATTATAACA 14110600 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || || ||||||| || | ||||| |||||||| Sbjct 14110601 TCCAGAAAGAGTCCACACTCCATTTGGTGCTCCGATTGAGAGGAGG 14110646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||| || | || || || | Sbjct 86551081 TGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 86551022 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || |||||| ||| || || || || ||||| ||||| | Sbjct 86551021 ACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCAGC 86550962 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || |||||||| ||| |||| | | |||||||| | Sbjct 86550961 AGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAACA 86550902 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 86550901 TCCAGAAGGAATCCAC 86550886 >seq854 Length=364260 Score = 100 bits (110), Expect = 4e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||| | ||||| || ||||| || | || || ||| | | Sbjct 69954 TGCAGATCTTTGTGAAGACACTGACAGGGAAGACAATCACCTTGGAGGTTGAAAGTTCTG 70013 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | |||||||| || || ||| ||||||||| ||||| || ||||| | Sbjct 70014 ATACAATTGATAATGTAAAGGCGAAGATCCAAGATAAAGAAGGGATTCCGCCAGATCAGC 70073 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| ||||| || | || ||| || || | | |||||||||| Sbjct 70074 AGCGATTGATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACTCTTGCTGATTATAATA 70133 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | || ||||| || || | ||||| || |||| || || ||||| | ||||||| Sbjct 70134 TCCAGAAAGAGTCCACACTGCATTTGGTGCTACGTTTGAGGGGAGGGATGCAAATATT 70191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785800891586480