Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12110 87.8 2e-12 seq1 82.4 7e-11 >seq12110 Length=10092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||||||||| || || ||| ||| |||||| | |||||| || | Sbjct 4453 TTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAG 4512 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC--GGTAA 132035 | | || || | ||| ||||| |||||||||||||||||||| ||||| Sbjct 4513 CAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATCCTGGTAA 4562 >seq1 Length=110538649 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| |||||||| ||||| || | |||||| ||| ||||||||||| || | Sbjct 85489611 TTGACTCCTTTTGAATATTGTAATCCGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTG 85489552 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 | |||| | ||| ||||||||||| || || ||||| ||||| Sbjct 85489551 CAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 85489509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476389611537840