Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1898 100 3e-16 seq8 89.7 5e-13 seq1 86.0 6e-12 seq1591 84.2 2e-11 >seq1898 Length=217218 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| ||||| ||||| || || ||||||| | ||||| || ||| Sbjct 78414 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTC 78473 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| |||| | ||||| ||| || || || |||||||| || || || | Sbjct 78474 A-GATACCGTCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 78532 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || | || | | || ||||||||||| |||| || | | ||||||| Sbjct 78533 AGCAGAGGTTGATATTTGCTGGGAAACAACTCGAGGATGGAAGGACCCTTGCAGATTACA 78592 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || ||||| ||| ||||||| ||| | | |||| ||||| Sbjct 78593 ATATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 78641 >seq8 Length=47755514 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| ||| | ||||| | ||||||||| | | Sbjct 5427292 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 5427233 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || ||| || || ||||| || || || |||||| Sbjct 5427232 GACACAATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGATCAG 5427173 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || | || | | || ||||| | ||||||| || | | | ||| |||||||| Sbjct 5427172 CAGAGGTTGATCTTTGCTGGTAAACAGTTGGAAGATGGAAGGACTTT-AGCTGATTACAA 5427114 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||| || || |||||| ||||||| ||| Sbjct 5427113 TATTCAGAAGGAGTCCACCCTTCATTTGGTG 5427083 >seq1 Length=110538649 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||||| ||||| ||||| || || |||||| | ||||| | ||||||||| | Sbjct 85489416 ATGCAAGTTTTTGTTAAAACCTTGACTGGAAAAACAATCACATTGGAAGTCGAAAGCTCG 85489475 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||||| ||||| || ||||| || || ||||| Sbjct 85489476 GACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAA 85489535 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || ||||| ||||| |||| | | | || ||||||||| Sbjct 85489536 CAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGGCGTACTCTCGCGGATTACAAT 85489595 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| || || || Sbjct 85489596 ATTCAAAAGGAGTCAAC 85489612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || || || |||||||| | || || || Sbjct 85489871 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTC 85489930 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || || || ||||| |||||||| || || || || Sbjct 85489931 TGATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCA 85489990 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| |||| | || |||||| | ||||||| || | | | ||||| || Sbjct 85489991 GCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTTGCAGATTATAA 85490050 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 ||||||||| ||||||||| |||| Sbjct 85490051 TATTCAAAAGGAATCCACCCTTCA 85490074 >seq1591 Length=249109 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| |||||||||| | ||||| | || ||||| | Sbjct 28352 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCC 28411 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | |||||| ||||| || ||||| || || || || |||||| Sbjct 28412 GACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 28471 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | || |||||| || || || || | | | || |||||||||| Sbjct 28472 CAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTCGCCGATTACAAT 28531 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || || || ||| |||| || || Sbjct 28532 ATCCAGAAGGAGTCTACCCTTCACTTGGT 28560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444887464486080