Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq11 87.8 1e-12 >seq6 Length=97571839 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| ||| | || || ||||||||||| | || || | | Sbjct 19649333 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGT 19649392 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | || ||| ||||||| ||||||||||| | || |||||| Sbjct 19649393 GACACCATTGACAATGTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 19649452 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||| | |||| ||| || |||||| | |||||| | ||| || ||||| ||| Sbjct 19649453 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATAAC 19649512 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATA 106489 || || || ||||| || || ||| | || ||| | | || ||||| || Sbjct 19649513 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGAGGTTA 19649562 >seq11 Length=61252062 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 106348 TTGCC--GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACA 106405 ||||| ||||||||||| | || |||||| || ||| | |||| ||| || ||||| Sbjct 13809771 TTGCCAGGACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACA 13809830 Query 106406 ATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTT 106465 || |||||| | |||| ||| |||||||| || || |||||||| ||||| || | Sbjct 13809831 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCT 13809890 Query 106466 AGTATTGAGGTTACGAGGAGGA 106487 || |||||| | | |||||| Sbjct 13809891 GGTTTTGAGGCTCAGGGGAGGA 13809912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402147223237952