Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 178 2e-38 >seq2 Length=96359640 Score = 178 bits (196), Expect = 2e-38 Identities = 360/524 (69%), Gaps = 14/524 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| |||||| || |||||| || Sbjct 42516417 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAG-CCTTGGCCTCTTTC 42516359 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACA-CGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||| || || || ||||| | |||| | | ||| |||||| | || | | Sbjct 42516358 TGGACTGCTGAAGAAGTCGATTTATCTTCCGATAACCGTC-ACTGGGAAACCCTAACCCC 42516300 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || || | |||||||||| |||||||| ||||||||| |||||| ||| ||||||| Sbjct 42516299 CGGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTT-GCCGCCTCCGACGGCATCG 42516241 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA-TTGCCAGAGGCACGTTTG 1455990 | || ||||| ||||| | || |||||||| |||||| ||||| ||||| ||| Sbjct 42516240 TTTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCC-GAGGCGCGTGCT 42516182 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| ||||| ||||| || |||||||||||||| || | ||| || || | Sbjct 42516181 TTCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTA 42516122 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || | ||| |||||||| | | ||| || | | || ||||| | || || | Sbjct 42516121 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATC 42516062 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || ||| ||||| | ||||| | |||||| || || ||| Sbjct 42516061 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCACTACGTTGGATC------GACGGTTCCGAA 42516008 Query 1456171 AC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 || ||||| ||||| | || | ||||| | || || || || |||||||| || || Sbjct 42516007 ACATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGC 42515948 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||| || || || ||| | || ||||| || | ||||| || Sbjct 42515947 TTCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 42515904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174223770337428