Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 190 3e-43 seq460 125 1e-23 seq155 109 8e-19 >seq2 Length=96359640 Score = 190 bits (210), Expect = 3e-43 Identities = 576/876 (66%), Gaps = 18/876 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| | ||||| || |||||||| || |||| || || Sbjct 42515553 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 42515612 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| ||||| || || | | | || || | | | Sbjct 42515613 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 42515672 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| || |||||||| |||||| | |||||| || | ||||||||| | || Sbjct 42515673 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 42515732 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || || || || | |||||| |||| || || || || |||| | || Sbjct 42515733 GCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 42515792 Query 39566 GATGTTACTACCTCATCACTCGG-TGGATGC--AATAAATGTTTAAACATTAAGCAGGCG 39622 | ||| || ||| | | | | | || ||| | || || | || ||| Sbjct 42515793 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCA---AACAAGCG 42515849 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || ||||| || | ||||| || || |||||| ||||| || || || | ||||||| Sbjct 42515850 AAATCACAGTGCAAACCCTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 42515909 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 |||| || |||||||| | ||| ||||| ||| || ||| | ||||| || || || || Sbjct 42515910 ATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAGAAGCTTCCAGAGAAAAAAATACC 42515968 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT-GT--ATCCA 39798 ||| || ||||||||||| | | ||| || || | || || | || ||||| Sbjct 42515969 TTCCACACAAGCAAATGCAACCAAACGCTC--CGCAAAT-GTTTCGGAACCGTCGATCCA 42516025 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 ||||||| | || ||||||| ||||| || || || || | || || | Sbjct 42516026 ACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA- 42516084 Query 39859 ATAATG--TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || || |||||| ||| || || | || | |||| | |||||| ||||| || Sbjct 42516085 ATC-TGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCG 42516143 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 || ||||||||||||||||| || || || ||||| ||| | || || | || ||| Sbjct 42516144 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGG 42516203 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 || ||| || ||| | || | ||||| || || || || ||||||||| Sbjct 42516204 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCGGAGGCGGCAAAA 42516263 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 || || | || || | || |||| ||||| |||| || | | | ||||| | | Sbjct 42516264 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGG 42516323 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 |||| |||| ||| ||||||||||| ||||| || || ||| || ||||||||| Sbjct 42516324 TTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCCAAGGCTTTTTTGTAC 42516383 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 || | ||| || | | ||||| ||||| || ||| Sbjct 42516384 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 42516419 >seq460 Length=501829 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | |||||||||||||| ||| Sbjct 289603 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACGCGTAGCATCGGAATAATTCCA 289544 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||| ||| ||||||||| || | | |||||||| || |||| Sbjct 289543 TTTGATGTCCCATTTGTCCCACGAATATAACTCCCAGTACCACGAATATTGTGAACAGAT 289484 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 289483 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACATTCCTTAAGAGTGTCATATATG 289424 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | ||| || |||||| Sbjct 289423 CCCTCGATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 289382 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || ||||| | || ||||| || |||||||||||| ||| ||| | || || Sbjct 289286 AGTTCCAGCGTTAAAAAGAGTTGGAGAGGCATGAGTGAACCATCTTTGAGACATCAAATG 289227 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || |||| || || ||||| ||||| || || || || | | || | ||||| Sbjct 289226 ATAAGTTTTGATGGCAGATTCAATATCATCCTTGTGGATCCCAACAGAAACTCTCATCAG 289167 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | |||||| ||| | || || || || ||||| || ||||| Sbjct 289166 CATATGTTGTGGCCTTTCTACAACTTTTTCGTTGATCTTTAAGAGGTAAGACCGCTCCAG 289107 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 289106 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCTGTCATATATGAT 289059 >seq155 Length=843148 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||||||||| |||||||| |||||||||||| || ||| | || || Sbjct 128082 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 128141 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||||| || || ||||| ||||| || ||||| || | | || | ||| | Sbjct 128142 ATATGTTTTGATGGCAGATTCAATATCATCCTTGTGAATACCAACAGATACTCTCATTAG 128201 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| |||| | || || || ||||| || | || || Sbjct 128202 CATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAAG 128261 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||||| || || || || Sbjct 128262 GGTTTTGAAACCAAAGTAATCATAGTCGAAGTCTCTGTCATATATGAT 128309 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | ||||| ||||||| ||| | || | |||||| |||| ||| ||| Sbjct 127667 CCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCCA 127726 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||| ||||| || | || || || || | ||| Sbjct 127727 TTCGATGTCCCATTTGTTCCACGAATGTAACTCCCAGTAGCACGTATGTTGTGCACAGAA 127786 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| || | || |||||||| Sbjct 127787 ACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATATT 127846 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | || || |||||| Sbjct 127847 CCCTCAATACTATCCTCTTTCATGCATATCAGGAAGCAGCTA 127888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686589438926160