Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq8 84.2 2e-11 >seq1 Length=110538649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||||| || || | ||| | |||||| || || || ||||||||||| | Sbjct 86550402 CCACCCCTCAACCTCAGCACAAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCTGCC 86550461 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | || || | |||||| || || | ||||| | ||| || || ||||| Sbjct 86550462 AGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGCGGA 86550521 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||| |||| | || | ||||||| | |||||| Sbjct 86550522 ATACCTTCCTTATCCCGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACT 86550581 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || | ||| ||||| | ||||| |||||||||||||| Sbjct 86550582 TCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 86550628 >seq8 Length=47755514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || || ||||||||| || ||| || ||||||| Sbjct 5427540 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCTTC 5427598 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | || | | ||| || |||||||| | || || ||||| Sbjct 5427599 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGCGGGATTCCTTCCTTATCCTG 5427658 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | | || | ||||| | | |||||| || || ||||| | || Sbjct 5427659 AATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCAACCTCAAGGGTTATCGTCTT 5427718 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| || ||||| ||||| Sbjct 5427719 TCCAGTTAGGGTTTTGACGAAGATCTGCAT 5427748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424741776439728