Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5025 107 2e-18 seq101 100 4e-16 seq11 89.7 6e-13 >seq5025 Length=72118 Score = 107 bits (118), Expect = 2e-18 Identities = 280/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 14647 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 14588 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 || ||||| || || | || ||| || | || ||||| || |||||||| || | | Sbjct 14587 CCGTCCATTTCTGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--CCTC 14530 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||| | || ||||| || | Sbjct 14529 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCGACAAATACAATGCAGG 14470 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || ||||| || || | ||| || |||||||||| Sbjct 14469 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCTACACCAACAA 14410 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| ||||| | || | || | || || ||||| ||| | |||||| || Sbjct 14409 ACATCTCAACAAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCGGCA 14351 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || |||||||| || ||||| || ||| | ||||| | ||| Sbjct 14350 ATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCGGGAGGACCAACAAGAAGAACACCTTTC 14291 Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || | | | ||||| | || | |||||||| | ||| | ||| || |||| ||| Sbjct 14290 GGAATACGAGCCCCCACTGCGGTAA-ACCTCTCGGGCTTCTTCAAAAATTCTACAACCTC 14232 >seq101 Length=1011416 Score = 100 bits (110), Expect = 4e-16 Identities = 247/371 (67%), Gaps = 18/371 (5%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| | || || | ||| | || | |||||| || || | |||||| || ||| Sbjct 764963 TCAAATCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGCA 765022 Query 11513 ATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || | | ||||| | || || ||| |||||||| || ||||| | ||| ||| Sbjct 765023 ATGACAATGACTCCAGTGT--TTCCAGTAAAA-CCATCCATTTCAGTGAGAAGTTGGTTA 765079 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAG---CACTGCGT---TGCTTG 11623 | ||| || ||||| ||||||||| | ||||||| || | | | ||| | Sbjct 765080 AGTGTCTGCTCTCTTTCATCATTTCC------ACCACCAATATCAGTTCCTCTCTGCCTC 765133 Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || ||||||||||||||||| || || | ||| ||| ||||| || | | Sbjct 765134 CCAACAGCATCAATCTCATCAATAAACACTAAACAAGGTGAATTTTGCTTTGCCTTGTTG 765193 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | || | ||| || || |||||||||||||||||||| || || | || || Sbjct 765194 AATAAGTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAACTCTGAACCA 765253 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 ||| | |||||| || | || ||| || ||||| || || || | ||||| Sbjct 765254 GAGAGAGATAAGAATGGAACCTCTGCTTCTCCGGCGATCGCCTTAGCTAGCAATGTCTTC 765313 Query 11804 CCCGTACCTGG 11814 || || ||||| Sbjct 765314 CCTGTCCCTGG 765324 >seq11 Length=61252062 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || || |||||||||||| | Sbjct 31421632 AACCCATCCATTTCTGTCAACAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCC---- 31421687 Query 11600 ATACCACCA-GCACTGCG-----TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||| ||| || |||| |||| | || || ||||||||||||||||| || ||| Sbjct 31421688 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 31421745 Query 11654 ATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 ||||| || | ||| | || | ||||| | ||| | || || || ||||| Sbjct 31421746 ATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCAC 31421804 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 ||| ||||||| ||| ||||| | || || | || || || || ||| || || Sbjct 31421805 ACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAACGGCACACCTGCCTC 31421864 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | |||| || | |||||||| || ||||| || Sbjct 31421865 ACCAGCAACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 31421906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627740012222400