Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5025 84.2 3e-11 >seq5025 Length=72118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/367 (66%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 14678 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 14619 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | || | || || || | || || || ||||| || ||||| ||||| || | Sbjct 14618 AACAACTATTATACCAGTATTTCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 14559 Query 14185 GGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 14242 ||| ||||| | |||||||||| | | | | | || | | | |||| || || Sbjct 14558 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 14501 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAA-CTTCAAAGAT 14301 || ||||||||||||| || || || || || |||||| ||| ||| ||| | Sbjct 14500 GCATCAATTTCATCGACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 14442 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 14361 ||| || |||| ||| || ||||| ||||||||||| ||||| | | | ||| | Sbjct 14441 ATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 14383 Query 14362 TTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420 ||| || || || || | |||||| || || || || || ||||||||||| | Sbjct 14382 TTGAGAAAAATGGAACACCCGCTTCACCGGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 14323 Query 14421 TCCCTGG 14427 | || || Sbjct 14322 TACCGGG 14316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618147674014640