Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5025 127 2e-24 seq1090 123 3e-23 seq11 114 2e-20 seq155 96.9 4e-15 >seq5025 Length=72118 Score = 127 bits (140), Expect = 2e-24 Identities = 255/369 (69%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 14678 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 14619 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||| ||||| |||||||| |||||||| Sbjct 14618 AACAACTATTATACCAGTATTTCCTT--CGAAACCGTCCATTTCTGTCAATAGTTGGTTC 14561 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 14560 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 14503 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAG 9760 | |||||||| ||||| | || || ||||| || |||||| || ||| ||| Sbjct 14502 CAGCATCAATTTCATCGACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 14444 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 14443 AGATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 14384 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 14383 -ATTGAGAAAAATGGAACACCCGCTTCACCGGCAATTGCCTTTGCTAGCAGGGTCTTCCC 14325 Query 9880 CGTACCTGG 9888 ||||| || Sbjct 14324 AGTACCGGG 14316 >seq1090 Length=315597 Score = 123 bits (136), Expect = 3e-23 Identities = 200/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || |||||||| || ||||||||||| || | ||||||||| | Sbjct 296002 AAACCCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGCTCTCTCTCATCATTCCC--A 296059 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || || ||| Sbjct 296060 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 296119 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||| | || || || || | ||||| ||| || | || || || Sbjct 296120 CAAGG--CGCTTTAGACTTCGCCTTCTCGAACAAATCCC--TCACTCTAGAAGCTCCAAC 296175 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 296176 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 296235 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || | |||| || | ||| ||||| || ||||| || Sbjct 296236 ACCAGCTACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 296277 >seq11 Length=61252062 Score = 114 bits (126), Expect = 2e-20 Identities = 197/283 (70%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| |||||||| || || |||||||| || |||| |||||||| | Sbjct 31421632 AACCCATCCATTTCTGTCAACAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCC---- 31421687 Query 9674 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 31421688 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 31421745 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCA 9785 || || || ||||| || || ||||| | ||||| ||| | || |||| Sbjct 31421746 ATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 31421803 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845 |||| ||||||| ||| ||||| | || || | |||| || || || ||| | | Sbjct 31421804 CACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAACGGCACACCTGCCT 31421863 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||| |||| |||| || | ||| |||||||| ||||| || Sbjct 31421864 CACCAGCAACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 31421906 >seq155 Length=843148 Score = 96.9 bits (106), Expect = 4e-15 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 ||||||| ||||| || ||| |||||| ||||||||||||||| | || || | || | Sbjct 128297 AGAGACTTCGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAG 128238 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 || | ||| | | |||| ||||| ||||| | ||| | || | | ||||| Sbjct 128237 ATTC-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTAATGAGAGTATCTGTTGGTAT 128179 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| ||| || ||||| |||| | | | ||||| | |||||| ||| | ||| Sbjct 128178 TCACAAGGATGATATTGAATCTGCCATCAAAACATATCATTTGATGTCTCAACGATGGTT 128119 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA--ATGTC 104370 || ||| ||| | ||||| | || |||||||| || |||||||| ||| ||||| Sbjct 128118 CACTCATGCATCTCCAACATTATTTAATGCTGGAACTCCAAGACCTCAAGTATGTC 128063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582989627472560