Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq27 100 1e-16 >seq27 Length=2050413 Score = 100 bits (110), Expect = 1e-16 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || |||||||| ||||||||||| || | ||| | ||| || |||| | | | | Sbjct 226008 CGAGTTCCAAATTGACCATTTGGTTGCAAAAGATTTACATTATTACTGCCAACATAGTCC 226067 Query 65147 TGAGCCATTCCGATAAT--TGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAAT 65204 || ||||| || || || |||||| | | |||| |||||| || ||||| |||| | Sbjct 226068 TGTGCCATGCCAATGATGGTGCTGC--TAAGACTCTGTTCACCATGGTGATAAGCTGAGT 226125 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAA 65264 ||||||||||||| ||| |||||| | ||||||| |||| | || ||| | |||| Sbjct 226126 GTTCAGAGACATAACCAGAAAATTGGGAAACTTTTGCTTCCTTAACAAAGTTCCTCTTAA 226185 Query 65265 ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATC 65307 | ||| | ||| || |||| | || |||||| ||||| Sbjct 226186 ACGCACAGAACAGAATCTTCCTTTGACCCGGTTTCAAACCATC 226228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235573165814100