Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 >seq2 Length=96359640 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 ||||||| | ||| | | || ||||| || |||||||| || || |||||||| | Sbjct 42516006 CATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 42515947 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 |||||||||| |||||| | |||||||| || | ||||| || | | |||||| |||| Sbjct 42515946 TCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACG 42515887 Query 60091 AGCTGATTTCCCGGGACGAGGG 60112 || | ||||| |||||||||| Sbjct 42515886 AGTTAATTTCAAGGGACGAGGG 42515865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548269777107360