Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq5352 82.4 2e-11 seq3694 82.4 2e-11 seq3433 82.4 2e-11 seq2352 82.4 2e-11 seq2321 82.4 2e-11 seq1858 82.4 2e-11 seq778 82.4 2e-11 seq553 82.4 2e-11 seq445 82.4 2e-11 seq132 82.4 2e-11 seq113 82.4 2e-11 seq29 82.4 2e-11 seq11 82.4 2e-11 seq9 82.4 2e-11 seq6 82.4 2e-11 >seq5352 Length=64191 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 14933 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 14874 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 14873 CTGTCTCCGCAAC 14861 >seq3694 Length=115624 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 91711 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 91770 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 91771 CTGTCTCCGCAAC 91783 >seq3433 Length=125506 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 107617 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 107558 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 107557 CTGTCTCCGCAAC 107545 >seq2352 Length=183148 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 159040 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 159099 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 159100 CTGTCTCCGCAAC 159112 >seq2321 Length=185184 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 92626 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 92685 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 92686 CTGTCTCCGCAAC 92698 >seq1858 Length=220927 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 26574 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 26633 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 26634 CTGTCTCCGCAAC 26646 >seq778 Length=387550 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 118130 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 118189 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 118190 CTGTCTCCGCAAC 118202 >seq553 Length=459799 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 154791 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 154732 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 154731 CTGTCTCCGCAAC 154719 >seq445 Length=510775 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 507802 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 507743 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 507742 CTGTCTCCGCAAC 507730 >seq132 Length=907447 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 821920 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 821979 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 821980 CTGTCTCCGCAAC 821992 >seq113 Length=966234 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 1778 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 1837 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 1838 CTGTCTCCGCAAC 1850 >seq29 Length=1785837 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 28551 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 28610 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 28611 CTGTCTCCGCAAC 28623 >seq11 Length=61252062 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 34501523 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 34501464 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 34501463 CTGTCTCCGCAAC 34501451 >seq9 Length=50975570 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 2012523 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 2012582 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 2012583 CTGTCTCCGCAAC 2012595 >seq6 Length=97571839 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 48623792 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 48623851 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 48623852 CTGTCTCCGCAAC 48623864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162453016249492