Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 2e-15 seq1 87.8 1e-12 seq854 82.4 5e-11 seq2 82.4 5e-11 >seq6 Length=97571839 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || || || || |||||| |||| || || ||| Sbjct 19649333 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGT 19649392 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || ||| |||||| ||||||||||| |||| || | Sbjct 19649393 GACACCATTGACAAT--GTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATC 19649450 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| ||||||||||||| ||||||||| | || || | || | || | ||||| | Sbjct 19649451 AACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATA 19649510 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || |||| | ||| | || |||||| | ||||| || Sbjct 19649511 ACATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGAGG 19649559 >seq1 Length=110538649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||||||||| || ||| || | || || || || | Sbjct 86551538 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGACTATAACTCTCGAAGTTGAGAGTTCA 86551479 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || ||| ||||| |||||||||||| |||| || | Sbjct 86551478 GACATGATCGACAAT--GTTAAAGCGAAAATCCAGGACAAAGAAGGTATTCCACCAGATC 86551421 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || ||||| ||||||||| | || || | ||| | | | ||||| | Sbjct 86551420 AACAACGTTTGATCTTTGCAGGAAAACAACTTGAGGATGGACGGACTCTCGCTGATTATA 86551361 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| ||| | || | ||| | ||| | ||||| || Sbjct 86551360 ACATTCAAAAGGAGTCAACTCTCCACCTTGTTCTTCGTCTACGTGGTGG 86551312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | || ||||| ||| || | || || || ||| | Sbjct 14109736 ATGCAGATCTTTGTAAAAACTTTAACAGGGAAGACTATCACTCTCGAGGTTGAGAGCTCA 14109795 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||| ||||| |||| ||| | Sbjct 14109796 GACACAATTGATAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 14109853 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| ||| | || || | || | | | | || |||| Sbjct 14109854 AGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 14109913 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || | ||| | ||||||||||| || Sbjct 14109914 ACATCCAAAAGGAGTCCACCCTCCACCTTGTTCTCCGTTTGCGTGGTGG 14109962 >seq854 Length=364260 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||||||| | |||||||| || || |||| || || ||| || Sbjct 69497 ATGCAGATTTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 69556 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || || ||||||||||| | || || | Sbjct 69557 GACACCATTGACAAT--GTTAAGGCGAAGATCCAGGACAAAGAAGGCATCCCTCCAGATC 69614 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || ||||| ||||| || | || || | |||| |||| |||| ||| Sbjct 69615 AGCAGAGGTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACTCTTG-CCGACTAC 69673 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | || | || | ||| ||||||| || Sbjct 69674 AACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTGCGTGGTGG 69723 >seq2 Length=96359640 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/235 (68%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || || || |||| |||||| | Sbjct 95422631 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAATCC 95422690 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| || || ||| || ||||| ||||| | || Sbjct 95422691 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCAC 95422745 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| || | ||||| ||||||||||| | || || | || | | | | | Sbjct 95422746 CGGACCAGCAGAGGCTCATTTTCGCCGGAAAACAGCTTGAAGATGGCCGAACCCTAGCTG 95422805 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || ||| |||| | |||||||| | ||| | ||||| || Sbjct 95422806 ATTACAACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTCTCCGTGGTGG 95422860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355701086906838