Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1898 100 2e-16 seq2 98.7 9e-16 seq854 91.5 1e-13 seq3157 86.0 5e-12 seq2165 82.4 7e-11 >seq1898 Length=217218 Score = 100 bits (110), Expect = 2e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| || || || ||||||| ||| || || ||| || ||||| Sbjct 78882 AAATATCTGCATACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTAT 78823 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 |||||||| |||||||| | | | || ||||| || || || |||||||| | ||||| Sbjct 78822 GTTATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAACCGCTG 78763 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | || ||||| ||||| || | | | | || || Sbjct 78762 CTGGTCTGGGGGAATCCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTATCAATTGTGTC 78703 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || |||| |||||| ||||||| |||| || || || ||||||||||| Sbjct 78702 TGAACTCTCAACCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 78643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||||||| || || || || || ||||| ||||| Sbjct 78645 CATGCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC 78586 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || | | | || || || ||||| || |||||||| | | ||||||||| | Sbjct 78585 TGCAAGGGTCCTTCCATCCTCGAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGG 78526 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATC---GCTC 39228 || | | ||| |||||| ||| || | || | |||| || ||||| |||| Sbjct 78525 AGGAATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCG--ACGGTATCTGAGCTC 78468 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | ||||| | || ||||| | ||||||||||| || ||||| Sbjct 78467 ---TCAACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 78415 >seq2 Length=96359640 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || || ||||| || || ||||| | || || Sbjct 95422843 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCTTC 95422784 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||| || || || || || | |||||||| ||||||| | || || |||||| Sbjct 95422783 AAGCTGTTTTCCGGCGAAAATGAGCCTCTGCTGGTCCGGTGGG-ATGCCTTCCTTGTCCT 95422725 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || || | ||| | | | || ||| || || || || | ||||| | Sbjct 95422724 GGATCTT-TGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 95422666 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || |||||||| ||||| || ||||| |||||||| Sbjct 95422665 TTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 95422631 >seq854 Length=364260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| || || |||| ||||||||| || ||| |||||| || || Sbjct 70192 AAATATTTGCATCCCTCCCCTCAAACGTAGCACCAAATGCAGTGTGGACTCTTTCTGGAT 70133 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||||||||| ||||| || | | || |||||||| || || ||||| || | ||||| Sbjct 70132 ATTATAATCAGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTG 70073 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||| || | || | | ||||| || ||| ||| || | | | | ||||| Sbjct 70072 CTGATCTGGCGGAATCCCTTCTTTATCTTGGATCTTCGCCTTTACATTATCAATTGTATC 70013 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| ||||| | || || ||||| || || |||||||| ||||| Sbjct 70012 AGAACTTTCAACCTCCAAGGTGATTGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 69953 >seq3157 Length=138538 Score = 86.0 bits (94), Expect = 5e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| ||||| || || | || ||||||||||| || ||||||| Sbjct 108062 CTTTTTGGATATTATAATCTGCAAGCGTACGGCCATCTTCAAGCTGTTTACCAGCAAATA 108003 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | ||||| ||||||| |||||| Sbjct 108002 TCAGACGTTGCTGGTCCGGTGG 107981 >seq2165 Length=195897 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| || ||||| ||| | || ||||||||||| || ||||| | Sbjct 70157 CTTTTTGGATATTATAATCAGCCAGTGTACGTCCATCTTCAAGCTGTTTACCAGCAAAGA 70098 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | | |||||||||| |||||| Sbjct 70097 TCAATCGCTGCTGGTCCGGTGG 70076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429350886174122