Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1898 86.0 5e-12 seq6 82.4 6e-11 >seq1898 Length=217218 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | |||||||| || |||||||||||||| || | || | ||| || Sbjct 78624 CACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCAAGGGTCCTTCCATCCTC 78565 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | |||||| || ||| |||| | ||| || |||||| || | || || ||||| Sbjct 78564 GAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 78505 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 || ||| || |||| | | || || |||| | | ||| | ||| || || || Sbjct 78504 GATCTTTGCCTTTACATTGTCGACGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTT 78445 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||| || ||||||| |||||| ||||| Sbjct 78444 GCCCGTTAAAGTTTTAACAAAAATCTGCAT 78415 >seq6 Length=97571839 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/126 (75%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATTGTTTGC 101099 || ||||| ||||||||||||||||| || | || || || |||||||| |||||| | Sbjct 19666968 GTGGATTCCTTTTGAATATTGTAATCAGCAA--GTGTTCGACCATCTTCCAGTTGTTTTC 19666911 Query 101100 CCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTT 101159 | ||| | || | ||||||||||||| || | ||||| ||||| ||| ||| || Sbjct 19666910 CAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATCTTTGTTT 19666851 Query 101160 TCACAT 101165 | |||| Sbjct 19666850 TAACAT 19666845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409475099991246