Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 210 2e-49 >seq2 Length=96359640 Score = 210 bits (232), Expect = 2e-49 Identities = 560/850 (66%), Gaps = 7/850 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| |||||||| Sbjct 42515568 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAC 42515627 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| || ||| | | ||| | | ||||| ||||| ||| Sbjct 42515628 GGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAACAATCTATCAGCCACA 42515687 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 ||||| || || | |||||| | || | || ||||| | | | |||| || ||||| Sbjct 42515688 AATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG-CGCACAAGGCAGCGC 42515746 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || |||||| |||||| || || |||| | || | || | | || Sbjct 42515747 GTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCTTAACTCGTTC 42515806 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | || | ||| | | | | | ||||| || |||||||| |||||||| Sbjct 42515807 CTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCAAACAAGCGAAATCACAGTGCAAACC 42515866 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 ||||| || ||| | ||||| || || |||||||| |||||||| || | |||||| Sbjct 42515867 CTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTT 42515926 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| |||||||| || ||||| || || || ||||| || ||||| || Sbjct 42515927 TAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTCCACACAAGCAAATGC 42515986 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || || || | | || | || ||| ||||| || |||||| || || Sbjct 42515987 AACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGTGCCCACTTCGC 42516043 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810 || |||| ||| || || || || | | ||| |||||| | |||||||| | Sbjct 42516044 CTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGA 42516103 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | || || | |||| || || || ||||| || || || || ||||| || || Sbjct 42516104 GTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGGATGTTTTCAATCGC 42516163 Query 4871 AATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929 || || || ||||| |||||| | || || | ||||| ||||| || || ||| Sbjct 42516164 GATTTGGAAGCCGTAGAAAGCA-CGCGCCTCGGCAACTTGGACTTCTTTCATGAACCTTC 42516222 Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | ||| |||||| || || ||||| ||| |||||||| || | || |||| | Sbjct 42516223 CGGCTAGGTTTTCTAAAACGATGCCGTCGGAGGCGGCAAAAAAGGCAAGGACGTGAGTGA 42516282 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || | | ||| | || | || ||| |||||| | ||| || |||||| | Sbjct 42516283 TGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGTTATCGGAAGATAAATCGA 42516342 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 |||||||| ||||||| || || || |||||||||||||| |||||| | || | Sbjct 42516343 CTTCTTCAGCAGTCCAGAAAGAGGCCAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 42516402 Query 5110 ACTGAATCGG 5119 | ||||| || Sbjct 42516403 ATTGAATTGG 42516412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426856017615602