Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq460 96.9 5e-15 seq155 95.1 2e-14 >seq460 Length=501829 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| | ||||| ||| ||||| || || |||||| ||| ||||||| Sbjct 290376 CTCTCTTTCATACTTTGTATACAGCTTCTCAAAATCTTCACCCCAACAATCTGCCAATCC 290317 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 |||| ||| |||| || | || ||||| | || | | | || |||| || ||||| Sbjct 290316 AGGGGCCTCACTTGGACAAAATAAAGACCACTGCCCGT-TGCTTTGGACTCTTTCCATAA 290258 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||| | ||| |||||| || |||||||||| | ||| ||||| Sbjct 290257 AAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGATGCTCTTC 290206 >seq155 Length=843148 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||||||||| ||||||||||| || |||||| || ||| | | || Sbjct 128082 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 128141 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||||| || || ||||| || || | ||| ||||| || || | ||| | ||| | Sbjct 128142 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGAATACCAACAGATACTCTCATTA 128200 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || || ||||| || ||| | || || || | ||| || | || | Sbjct 128201 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 128260 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || |||||||| || || || || Sbjct 128261 GGGTTTTGAAACCAAAGTAATCATAGTCGAAGTCTCTGTCATATATGAT 128309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694345831108160