Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq155 100 4e-16 seq460 91.5 2e-13 >seq155 Length=843148 Score = 100 bits (110), Expect = 4e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||||| || ||| |||||| || || | |||||| ||||||| ||| | || | | Sbjct 127649 ACACCCTTTCTTTTGCCACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGC 127708 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| ||| || || ||||| |||||||||||| ||| ||||| ||| ||| Sbjct 127709 AGCATAGGAACAATTCCATTCGATGTCCCATTTGTTCCACGAATGTAACTCCCAGTAGCA 127768 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 || || || | ||| | || ||||| || || ||| || | |||||| Sbjct 127769 CGTATGTTGTGCACAGAAACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCC 127828 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || | || ||||| || ||||| |||||||| || ||||| | || || |||||| Sbjct 127829 TTAAGAGTATCATATATTCCCTCAATACTATCCTCTTTCATGCATATCAGGAAGCAGCTA 127888 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| ||||| ||||||||||||||||||||| || ||| | | || Sbjct 128082 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 128141 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||||| || | | ||| ||||| | ||| ||||| || |||| || | ||| | Sbjct 128142 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGAATACCAACAGATACTCTCATTA 128200 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || || || | ||||||| ||| | || || || | ||| || | || | Sbjct 128201 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 128260 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||||| || || || || Sbjct 128261 GGGTTTTGAAACCAAAGTAATCATAGTCGAAGTCTCTGTCATATATGAT 128309 >seq460 Length=501829 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| || ||||| | || ||||| ||||||||||||||| ||| ||| | | || Sbjct 289286 AGTTCCAGCGTTAAAAAGAGTTGGAGAGGCATGAGTGAACCATCTTTGAGACATCAAATG 289227 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || |||| || | | ||| ||||| | ||| || || || |||| || | ||||| Sbjct 289226 ATAAGTTTTGATGGCAGATTCAATATCATCCTTG-TGGATCCCAACAGAAACTCTCATCA 289168 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || || | ||||||| || | || || || || | ||| || |||| Sbjct 289167 GCATATGTTGTGGCCTTTCTACAACTTTTTCGTTGATCTTTAAGAGGTAAGACCGCTCCA 289108 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| || || || || || Sbjct 289107 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCTGTCATATATGAT 289059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712602938974080