Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20attenuata_20[refseq_20GCF_5F001879085.1_202016-11-15] 37,194 sequences; 2,365,682,703 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq1 96.9 3e-15 seq8 95.1 1e-14 seq1898 84.2 2e-11 seq11 82.4 6e-11 >seq6 Length=97571839 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || | || || || |||||||| | || || | | Sbjct 19649333 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTTGAGGTTGAGAGCTGT 19649392 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || ||| ||||||| ||||||||||| |||| |||||| Sbjct 19649393 GACACCATTGACAATGTTAAAACAAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAA 19649452 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | |||| ||| || |||||| | |||||| | ||| || | |||||||| Sbjct 19649453 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTGACTGATTATAAC 19649512 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || ||| | ||||||||||| || || || Sbjct 19649513 ATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGAGG 19649559 Score = 102 bits (112), Expect = 7e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 111176 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111235 ||||||||| | || ||||| ||||| |||| || ||||||||| | |||| || Sbjct 19666849 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTGATTTTTG 19666907 Query 111236 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111295 | || |||||| |||||||| | ||| | || ||||| ||||| ||||| ||||| | Sbjct 19666908 CTGGAAAACAACTGGAAGATGGTCGAACACTTGCTGATTACAATATTCAAAAGGAATCCA 19666967 Query 111296 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||| | ||||||||||| |||| || Sbjct 19666968 CACTCCATCTTGTGTTGCGTCTTTGCGGAGG 19666998 >seq1 Length=110538649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| || || ||||| || ||||| || || ||||| || | Sbjct 86551311 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCTC 86551252 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || || ||| | || || |||||| || || ||||| |||| || || Sbjct 86551251 GGACACTATTGATAACGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 86551192 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||||||||| |||| ||| || || |||||||||||| ||| |||| |||||||| Sbjct 86551191 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 86551132 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||| || || || || || |||| | || || || ||||| Sbjct 86551131 TATTCAAAAGGAGTCAACGCTCCACCTAGTCCTTCGCCTTCGTGGTGG 86551084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| || || || || || ||||| || || ||||| || | Sbjct 85490099 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 85490158 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | | || || |||||| ||||| |||||| |||| ||||| Sbjct 85490159 GGACACGATAGACAATGTTAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCGGATCA 85490218 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || ||||| |||| ||| || |||||||||||||| | ||| | || || ||||| Sbjct 85490219 GCAGAGGCTGATTTTTGCTGGGAAACAATTGGAAGACGGGAGGACTCTTGCTGACTATAA 85490278 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || || ||||| || |||| | || || || ||||| Sbjct 85490279 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGG 85490326 >seq8 Length=47755514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| || ||||||||||| ||||| || ||| | ||| ||| | | Sbjct 5427292 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 5427233 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || || ||| ||||| || || | || ||||| Sbjct 5427232 GACACAATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGATCAG 5427173 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | || | ||| || ||||| ||||||||| | ||| | || ||||| ||| Sbjct 5427172 CAGAGGTTGATCTTTGCTGGTAAACAGTTGGAAGATGGAAGGACTTTAGCTGATTACAAT 5427113 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || || || ||||| ||| | ||||| || ||||| Sbjct 5427112 ATTCAGAAGGAGTCCACCCTTCATTTGGTGCTCCGTCTTCGTGGTGG 5427066 >seq1898 Length=217218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| ||||| || || ||||| || ||||| ||| | Sbjct 78871 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 78930 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218 || || ||| | | || || |||||| || |||||||| | |||| | ||||| Sbjct 78931 GACACTATTGACAACGTCAAGGCCAAAATTCAGGATAAAGAAGG-GATCCCACCAGATCA 78989 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || ||||| || | ||| || || || |||| ||| || | || ||||| || Sbjct 78990 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 79049 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||| ||||| ||||| || | ||| | || || || ||||| Sbjct 79050 TATCCAAAAGGAATCCACACTCCACCTTGTGCTTCGCCTTCGTGGTGG 79097 >seq11 Length=61252062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 111188 TTGCC--GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACA 111245 ||||| ||||||||||| | || ||||| || ||| | |||| ||| || ||||| Sbjct 13809771 TTGCCAGGACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACA 13809830 Query 111246 ATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111302 ||||||||| | |||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 13809831 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 13809887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421619992192144