Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq44697 98.7 1e-15 >seq44697 Length=182102 Score = 98.7 bits (108), Expect = 1e-15 Identities = 482/752 (64%), Gaps = 15/752 (2%) Strand=Plus/Plus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 |||||||| || |||||||| || |||| || ||| || || | |||||||| | || Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG- 113158 Query 16853 CGTACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 || || || || || || || ||| || | ||||| | || || || || || Sbjct 113159 CGCACAAGGCAGCGCATCACACACAAACTCCCTT-TCTATCTCCACAGCATCTGCAACAA 113217 Query 16911 TACTAGCAACTCGTTCCTCGG-ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 | | |||||||||||| | | | | | |||| | | || | || ||| || Sbjct 113218 TTCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCA 113276 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||| || || || || ||||| || || | ||||| || || || || || ||| Sbjct 113277 AAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGC 113336 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || || || || |||||||| ||||| || || || || || || ||||| Sbjct 113337 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGGAGAAAAAAATACCT 113396 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || || | ||||| || | || || || || | || || || ||| |||| Sbjct 113397 TCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGT--CGA-TCCAA 113453 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT 17209 | |||||| || || | || | || || || || | || |||||| Sbjct 113454 CGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAAT 113513 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | |||||| | ||| | || |||| || | || || |||||||| |||||| Sbjct 113514 CTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAG 113573 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAAC 17328 || ||||| || || || || || || ||||| |||||| ||||| || || | ||| || Sbjct 113574 TGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CGGGCCTCGGCAACTTGGAC 113632 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 ||| ||| | | | ||||| ||||| ||||||||||| ||||| ||||| Sbjct 113633 TTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 113692 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGT--CCTTT 17446 || | | || | ||||||| |||| | ||||| || ||||| | || Sbjct 113693 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTT 113752 Query 17447 AAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATAC 17506 ||| || | ||| |||||||| | ||||| ||| || | || ||||| ||| Sbjct 113753 --ATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 113810 Query 17507 ATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || | |||||| | |||||| || ||||| Sbjct 113811 ATTTCCCAAATTTGTGGGTATTGAATTGGGAA 113842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517201897967040