Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq38302 174 2e-38 seq44697 168 8e-37 >seq38302 Length=59671 Score = 174 bits (192), Expect = 2e-38 Identities = 566/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||| || || || || | || || || |||||||| || |||| ||| || Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| |||| | ||||| | |||| || | | ||| | ||||| || | | Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 |||||||| || ||||| || || ||| | |||||| || | ||||||||| | || Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039 Query 24084 GATCTTACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATGCG 24140 | ||| ||| ||| | | | ||| ||| || | | |||||| ||| Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAAC---TATAAAGCAAACAAGCG 23096 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| ||||| | ||| ||||| || |||||| ||||| || || || | ||| ||| Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 24259 |||| || |||||||| | ||| ||||| | | |||| | | ||||| || ||||| || Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCAGAGAAAAAAATACC 23215 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCATGTATCCA 24316 ||| || | ||| |||| | | || || | ||| | ||| ||||| Sbjct 23216 TTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCA 23272 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 | | ||||| | |||||||| | ||||| || || ||||| | || || | Sbjct 23273 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAA 23332 Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436 | ||||||| | | || || | || | || | | ||||| ||||| || || Sbjct 23333 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 23392 Query 24437 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 24496 || ||||||||||| || ||||| || ||||||||| | ||||||| || || || Sbjct 23393 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGAC 23452 Query 24497 TTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 24556 |||| | || | | |||| ||||| || || ||||| ||| |||||||| Sbjct 23453 TTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 23512 Query 24557 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 24616 || | || || | || |||| |||| | |||||||| | | ||| | | | | Sbjct 23513 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGT 23572 Query 24617 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 ||| ||||| ||| ||||||||| | ||||| || || || || ||||| ||||| Sbjct 23573 ATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 23632 Query 24677 ATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 | ||| || | | ||||||||||| || ||| Sbjct 23633 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 23666 >seq44697 Length=182102 Score = 168 bits (186), Expect = 8e-37 Identities = 390/584 (67%), Gaps = 8/584 (1%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| || ||||| ||||| | ||| ||||| ||| |||||| ||||| || || || Sbjct 113267 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGT 113326 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | ||| ||||||| || |||||||| | ||| ||||| | | |||| | | || || | Sbjct 113327 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCGGAGA 113385 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306 | ||||| ||||| || ||||| |||| | | || || | ||| | || Sbjct 113386 AAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGT 113445 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | ||||| | | ||||| | |||||||| | ||||| || || ||||| | | Sbjct 113446 CG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTG 113502 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || | | ||||||| | | || || | || | || | | ||||| | Sbjct 113503 CGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGT 113562 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || ||||||||||| || ||||| || ||||||||| | ||||||| Sbjct 113563 ACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGG 113622 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || || |||||| | || | | | |||| ||||| || || ||||| || Sbjct 113623 CAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGG 113682 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 | |||||||| || | || || | || |||| |||| | |||||||| | | || Sbjct 113683 CGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCC 113742 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | | |||| ||| | ||| |||||||| | ||||| || || || || | Sbjct 113743 AGTGACGGTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTT 113802 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 |||| ||||| | ||| || | | ||||||||||| || ||| Sbjct 113803 TTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593327309485440