Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq38302 174 2e-38
seq44697 168 8e-37
>seq38302
Length=59671
Score = 174 bits (192), Expect = 2e-38
Identities = 566/874 (65%), Gaps = 14/874 (2%)
Strand=Plus/Plus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903
||||| || || || || | || || || |||||||| || |||| ||| ||
Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859
Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963
||||| |||| | ||||| | |||| || | | ||| | ||||| || | |
Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919
Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023
|||||||| || ||||| || || ||| | |||||| || | ||||||||| | ||
Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979
Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083
| || || || || | ||| || ||| || || || |||| | |||
Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039
Query 24084 GATCTTACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATGCG 24140
| ||| ||| ||| | | | ||| ||| || | | |||||| |||
Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAAC---TATAAAGCAAACAAGCG 23096
Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200
||||| ||||| | ||| ||||| || |||||| ||||| || || || | ||| |||
Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156
Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 24259
|||| || |||||||| | ||| ||||| | | |||| | | ||||| || ||||| ||
Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCAGAGAAAAAAATACC 23215
Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTCATGTATCCA 24316
||| || | ||| |||| | | || || | ||| | ||| |||||
Sbjct 23216 TTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCA 23272
Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376
| | ||||| | |||||||| | ||||| || || ||||| | || || |
Sbjct 23273 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAA 23332
Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436
| ||||||| | | || || | || | || | | ||||| ||||| || ||
Sbjct 23333 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 23392
Query 24437 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 24496
|| ||||||||||| || ||||| || ||||||||| | ||||||| || || ||
Sbjct 23393 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGAC 23452
Query 24497 TTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 24556
|||| | || | | |||| ||||| || || ||||| ||| ||||||||
Sbjct 23453 TTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 23512
Query 24557 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 24616
|| | || || | || |||| |||| | |||||||| | | ||| | | | |
Sbjct 23513 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGT 23572
Query 24617 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676
||| ||||| ||| ||||||||| | ||||| || || || || ||||| |||||
Sbjct 23573 ATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 23632
Query 24677 ATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710
| ||| || | | ||||||||||| || |||
Sbjct 23633 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 23666
>seq44697
Length=182102
Score = 168 bits (186), Expect = 8e-37
Identities = 390/584 (67%), Gaps = 8/584 (1%)
Strand=Plus/Plus
Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190
|||||| || ||||| ||||| | ||| ||||| ||| |||||| ||||| || || ||
Sbjct 113267 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGT 113326
Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249
| ||| ||||||| || |||||||| | ||| ||||| | | |||| | | || || |
Sbjct 113327 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCGGAGA 113385
Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306
| ||||| ||||| || ||||| |||| | | || || | ||| | ||
Sbjct 113386 AAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGT 113445
Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366
| ||||| | | ||||| | |||||||| | ||||| || || ||||| | |
Sbjct 113446 CG---ATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTG 113502
Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426
| || | | ||||||| | | || || | || | || | | ||||| |
Sbjct 113503 CGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGT 113562
Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486
|||| || || || ||||||||||| || ||||| || ||||||||| | |||||||
Sbjct 113563 ACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGG 113622
Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546
|| || |||||| | || | | | |||| ||||| || || ||||| ||
Sbjct 113623 CAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGG 113682
Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606
| |||||||| || | || || | || |||| |||| | |||||||| | | ||
Sbjct 113683 CGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCC 113742
Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666
| | | | |||| ||| | ||| |||||||| | ||||| || || || || |
Sbjct 113743 AGTGACGGTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTT 113802
Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710
|||| ||||| | ||| || | | ||||||||||| || |||
Sbjct 113803 TTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593327309485440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |