Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq50758 95.1 1e-14 seq51452 93.3 4e-14 seq50574 87.8 2e-12 >seq50758 Length=122349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 118036 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 118095 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| || ||| |||||||| || | || |||||| Sbjct 118096 GACACAATTGACAACGTTAAGGCGAAGATTCAGGATAAAGAGGGAATCCCACCAGATCAG 118155 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| |||||||| |||||||| | || | || |||||||| Sbjct 118156 CAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTAGCTGATTACAAC 118215 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || ||||||||| ||||| Sbjct 118216 ATTCAGAAGGAGTCGACTCTTCACTTGGTG 118245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||||||| | || || || || || ||| |||| ||| | | Sbjct 118492 ATGCAGATCTTCGTCAAAACACTCACTGGGAAGACTATCACCCTCGAAGTCGAAAGCTCC 118551 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || ||| || || || ||| | || ||| || Sbjct 118552 GATACTATTGACAATGTTAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 118611 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || |||||||| | |||| | || ||||| ||| Sbjct 118612 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGGAGAACTTTAGCTGATTATAAT 118671 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || ||||||||||| || |||||| ||||| | || | || || ||| Sbjct 118672 ATCCAGAAGGAATCCACACTTCACTTGGTGCTCCGTCTTCGTGGTGGG 118719 >seq51452 Length=252770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || ||||| |||||||| || ||| || | | Sbjct 4066 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 4007 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| ||| ||| ||||| || || | || ||| || Sbjct 4006 AGACACGATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATTCCACCAGACCA 3947 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || ||||||||||| || || || |||| ||| | || | || |||||||| Sbjct 3946 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCTGATTACAA 3887 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||| |||||||| || Sbjct 3886 TATTCAGAAGGAGTCTACTCTCCA 3863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | |||||||| || || ||||| || || ||| || | | Sbjct 59127 AATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 59068 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| ||||| |||||| | || || || Sbjct 59067 GGATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 59008 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||||| || ||||| || || ||| |||||||| ||| |||| ||||| || Sbjct 59007 ACAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 58948 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||| ||||| || || || ||| Sbjct 58947 TATTCAAAAGGAGTCAACACTCCAC 58923 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| ||||| || ||||| || || ||| ||| | | Sbjct 4750 AATGCAAATTTTTGTTAAAACCTTGACTGGGAAAACAATCACATTGGAAGTCGAAAGCTC 4691 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || ||||| ||||| ||||| |||||| | || |||||| Sbjct 4690 GGACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCGCCAGATCA 4631 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | |||||||| || ||||| || || ||| ||| | || |||||||| Sbjct 4630 ACAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCTGATTACAA 4571 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||| ||||| || || || ||| Sbjct 4570 TATTCAAAAGGAGTCAACACTCCAC 4546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || ||||| || ||||| || ||| || | | Sbjct 58215 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 58156 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || || |||||||||||| | || || || Sbjct 58155 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 58096 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || ||||| |||| ||| | || |||| || ||||| Sbjct 58095 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACAA 58036 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 ||| |||||||| |||||||| || Sbjct 58035 TATCCAGAAGGAGTCTACTCTCCA 58012 >seq50574 Length=377344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| ||||| |||||||| || ||||| || || || Sbjct 95182 GACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAG 95123 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || | ||| | ||||||||||| || |||||||||||||| |||||| |||| Sbjct 95122 GACGGCCGTACTCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCACTTGGT 95067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428058653510840