Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq51452 95.1 1e-14 >seq51452 Length=252770 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | |||||||| || || ||||| || || ||| || | | Sbjct 59127 AATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 59068 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| |||||| ||||| |||||| | || || || Sbjct 59067 GGATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 59008 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||||| || ||||| || || |||||||||||| ||| |||| ||||| || Sbjct 59007 ACAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 58948 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| || || || ||| Sbjct 58947 TATTCAAAAGGAGTCAACACTCCAC 58923 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| || ||||| |||||||| || ||| || | | Sbjct 4066 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 4007 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | || | ||| ||| ||| ||||| || || | || ||| || Sbjct 4006 AGACACGATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATTCCACCAGACCA 3947 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || || || ||||| ||| | || | || |||||||| Sbjct 3946 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCTGATTACAA 3887 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 |||||| ||||| |||||||| || Sbjct 3886 TATTCAGAAGGAGTCTACTCTCCA 3863 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 58577 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 58518 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| ||||||||||||||||| || |||||| Sbjct 58517 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCAC 58467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| || ||||| || ||||| || ||| || | | Sbjct 58215 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 58156 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | || | ||| || || |||||||||||| | || || || Sbjct 58155 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 58096 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || |||||||| || ||||| ||||| ||| | || |||| || ||||| Sbjct 58095 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACAA 58036 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||| || ||||| |||||||| || Sbjct 58035 TATCCAGAAGGAGTCTACTCTCCA 58012 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| ||||| || ||||| || || ||| ||| | | Sbjct 4750 AATGCAAATTTTTGTTAAAACCTTGACTGGGAAAACAATCACATTGGAAGTCGAAAGCTC 4691 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || ||| | | || | ||| ||||| ||||| |||||| | || |||||| Sbjct 4690 GGACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCGCCAGATCA 4631 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | | |||||||| || ||||| | || ||| ||| | || |||||||| Sbjct 4630 ACAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCTGATTACAA 4571 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| || || || ||| Sbjct 4570 TATTCAAAAGGAGTCAACACTCCAC 4546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410530810098992