Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq51452 123 4e-23
seq50708 107 3e-18
seq32633 107 3e-18
seq37995 100 4e-16
seq3636 93.3 6e-14
seq48040 91.5 2e-13
seq19192 84.2 3e-11
>seq51452
Length=252770
Score = 123 bits (136), Expect = 4e-23
Identities = 138/191 (72%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147
|||| || ||||||||||||| ||||| | | ||| || ||||| || ||||||||||
Sbjct 58938 CTTTTGA-ATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAA 58996
Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNN 146207
||| |||||| || ||||| ||||| ||||| ||||||||
Sbjct 58997 TCAGTCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGTCTTAACATTAT 59056
Query 146208 NNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGA 146267
|||||| || || || ||||| | ||||||||||| || ||||||||||||| ||
Sbjct 59057 CAATAGTATCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCGGTTAATGTTTTAACGA 59116
Query 146268 ATATTTGCATT 146278
| |||||||||
Sbjct 59117 AAATTTGCATT 59127
Score = 91.5 bits (100), Expect = 2e-13
Identities = 125/183 (68%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|| |||||||| | |||||||| | ||| |||||||| || |||||||||||||| ||
Sbjct 58717 ATGTTATAATCAGCCAGAGTTCTTCCATCTTCTAATTGCTTCCCAGCAAAAATCAACCTC 58776
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215
|||||||| || || || || || || ||||| ||
Sbjct 58777 TGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATTTTAGACTTAACATTGTCTATCGTG 58836
Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275
|| || || || ||||| | ||||||||||| || ||||| || |||| || ||||||
Sbjct 58837 TCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAAATTTGC 58896
Query 146276 ATT 146278
|||
Sbjct 58897 ATT 58899
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/140 (75%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107
||||||| || || || | || | || | || ||||| ||| || ||||||||||||
Sbjct 58442 TTCCACCCCTTAGCCTGAGAACAAGGTGAAGGGTGGATTCCTTTTGA-ATATTATAATCT 58500
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||||| || | ||| || |||||||| || |||||||||| ||| ||||| || ||
Sbjct 58501 GCGAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGT 58560
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || || || ||||| ||
Sbjct 58561 GGGATACCCTCCTTATCCTG 58580
>seq50708
Length=321788
Score = 107 bits (118), Expect = 3e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125
|| || | ||| | ||| ||||| || || |||||||| | ||| |||| | |||
Sbjct 282143 AACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGCAAGTGTTCGCCCATCC 282202
Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185
|| | ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||
Sbjct 282203 TCGAGTTGTTTTCCAGCAAAAATCAACCTTTGTTGATCCGGAGGAATTCCTTCCTTGTCT 282262
Query 146186 TG 146187
||
Sbjct 282263 TG 282264
>seq32633
Length=132462
Score = 107 bits (118), Expect = 3e-18
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
||||| || || | |||||||| || ||| ||||| || ||||||||||| ||||| |||
Sbjct 61387 ATATTGTAGTCAGCAAGAGTTCGGCCATCCTCTAACTGCTTTCCAGCAAAGATCAACCTT 61446
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|||||||| |||||||||||||| ||||||||
Sbjct 61447 TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 61478
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| || || || | |||| ||| | ||| ||||| || ||||| || || | |
Sbjct 60886 CCACCCCTCAGCCTCAGCACCAGATGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 60945
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||| | | ||| || | ||| ||||||||||| ||||| || |||||||| ||||||
Sbjct 60946 AGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 61005
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||||||||| ||
Sbjct 61006 ATGCCTTCTTTATCCTG 61022
Score = 87.8 bits (96), Expect = 3e-12
Identities = 140/209 (67%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | || || ||||| || |||||||| | |||||| || | ||| ||
Sbjct 60448 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGAGTCCTCCCATCCTCA 60507
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
| || || ||||||||||| || | ||||| ||||| ||||| |||||||| |||||
Sbjct 60508 AGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGG 60567
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
||||||||||| || ||||| || |||||||| ||
Sbjct 60568 ATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACTTCCAGCGTGATTGTCTTC 60627
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| || || || || | || || |||||
Sbjct 60628 CCAGTCAACGTCTTCACAAAGATCTGCAT 60656
>seq37995
Length=189229
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| ||||| || || || |||| || | || |||||||| ||||| |||||
Sbjct 163969 GTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCA 163910
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||||||| | ||| || || ||||||||||||||||||| || ||||| || |||
Sbjct 163909 GCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGA 163850
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || |||||||| || ||
Sbjct 163849 GGTATCCCTTCTTTGTCCTG 163830
>seq3636
Length=134301
Score = 93.3 bits (102), Expect = 6e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| || || || ||||| ||||| ||||| | ||| || || | ||| ||
Sbjct 16063 ACCAAATGCAACGTGGACTCTTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCA 16004
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| || || |||||||| ||||||| |||||||| || ||||| ||||||||||||||
Sbjct 16003 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATCCCTTCTTTATCTTG 15945
>seq48040
Length=167738
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| || || || || || || | || | ||| |||||||| || || |||||
Sbjct 54783 GTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCA 54724
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| || || | | ||| || || ||||| ||||||||||||| ||| |||||||| |||
Sbjct 54723 GCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGA 54664
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || ||||||||||| ||
Sbjct 54663 GGTATGCCTTCTTTATCCTG 54644
>seq19192
Length=430667
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/108 (79%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139
||||| || ||| || ||||| ||||| | |||||||| || ||| || | || |||||
Sbjct 373892 GTAGACTCCTTTTGA-ATATTGTAATCAGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCC 373950
Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|||||| |||| || ||||| || |||||||| ||||| || |||||
Sbjct 373951 AGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTCTTG 373998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743032624117760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |