Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq51452 123 4e-23 seq50708 107 3e-18 seq32633 107 3e-18 seq37995 100 4e-16 seq3636 93.3 6e-14 seq48040 91.5 2e-13 seq19192 84.2 3e-11 >seq51452 Length=252770 Score = 123 bits (136), Expect = 4e-23 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || ||||||||||||| ||||| | | ||| || ||||| || |||||||||| Sbjct 58938 CTTTTGA-ATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAA 58996 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNN 146207 ||| |||||| || ||||| ||||| ||||| |||||||| Sbjct 58997 TCAGTCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGTCTTAACATTAT 59056 Query 146208 NNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGA 146267 |||||| || || || ||||| | ||||||||||| || ||||||||||||| || Sbjct 59057 CAATAGTATCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCGGTTAATGTTTTAACGA 59116 Query 146268 ATATTTGCATT 146278 | ||||||||| Sbjct 59117 AAATTTGCATT 59127 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/183 (68%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | |||||||| | ||| |||||||| || |||||||||||||| || Sbjct 58717 ATGTTATAATCAGCCAGAGTTCTTCCATCTTCTAATTGCTTCCCAGCAAAAATCAACCTC 58776 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| || || || || || || ||||| || Sbjct 58777 TGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATTTTAGACTTAACATTGTCTATCGTG 58836 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || || || || ||||| | ||||||||||| || ||||| || |||| || |||||| Sbjct 58837 TCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAAATTTGC 58896 Query 146276 ATT 146278 ||| Sbjct 58897 ATT 58899 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | || ||||| ||| || |||||||||||| Sbjct 58442 TTCCACCCCTTAGCCTGAGAACAAGGTGAAGGGTGGATTCCTTTTGA-ATATTATAATCT 58500 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || | ||| || |||||||| || |||||||||| ||| ||||| || || Sbjct 58501 GCGAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGT 58560 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || || ||||| || Sbjct 58561 GGGATACCCTCCTTATCCTG 58580 >seq50708 Length=321788 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || | ||| | ||| ||||| || || |||||||| | ||| |||| | ||| Sbjct 282143 AACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGCAAGTGTTCGCCCATCC 282202 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | ||||||||||||||||||||| ||||| |||||||||||||||||||| || ||| Sbjct 282203 TCGAGTTGTTTTCCAGCAAAAATCAACCTTTGTTGATCCGGAGGAATTCCTTCCTTGTCT 282262 Query 146186 TG 146187 || Sbjct 282263 TG 282264 >seq32633 Length=132462 Score = 107 bits (118), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || | |||||||| || ||| ||||| || ||||||||||| ||||| ||| Sbjct 61387 ATATTGTAGTCAGCAAGAGTTCGGCCATCCTCTAACTGCTTTCCAGCAAAGATCAACCTT 61446 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| |||||||| Sbjct 61447 TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 61478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || || | |||| ||| | ||| ||||| || ||||| || || | | Sbjct 60886 CCACCCCTCAGCCTCAGCACCAGATGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 60945 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||| ||||||||||| ||||| || |||||||| |||||| Sbjct 60946 AGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 61005 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 61006 ATGCCTTCTTTATCCTG 61022 Score = 87.8 bits (96), Expect = 3e-12 Identities = 140/209 (67%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || ||||| || |||||||| | |||||| || | ||| || Sbjct 60448 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGAGTCCTCCCATCCTCA 60507 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | || || ||||||||||| || | ||||| ||||| ||||| |||||||| ||||| Sbjct 60508 AGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGG 60567 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||||||||| || ||||| || |||||||| || Sbjct 60568 ATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACTTCCAGCGTGATTGTCTTC 60627 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || || | || || ||||| Sbjct 60628 CCAGTCAACGTCTTCACAAAGATCTGCAT 60656 >seq37995 Length=189229 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || |||| || | || |||||||| ||||| ||||| Sbjct 163969 GTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCA 163910 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| | ||| || || ||||||||||||||||||| || ||||| || ||| Sbjct 163909 GCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGA 163850 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 163849 GGTATCCCTTCTTTGTCCTG 163830 >seq3636 Length=134301 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || || ||||| ||||| ||||| | ||| || || | ||| || Sbjct 16063 ACCAAATGCAACGTGGACTCTTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCA 16004 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||| ||||||| |||||||| || ||||| |||||||||||||| Sbjct 16003 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATCCCTTCTTTATCTTG 15945 >seq48040 Length=167738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || || | || | ||| |||||||| || || ||||| Sbjct 54783 GTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCA 54724 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || || | | ||| || || ||||| ||||||||||||| ||| |||||||| ||| Sbjct 54723 GCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGA 54664 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 54663 GGTATGCCTTCTTTATCCTG 54644 >seq19192 Length=430667 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||||| || ||| || ||||| ||||| | |||||||| || ||| || | || ||||| Sbjct 373892 GTAGACTCCTTTTGA-ATATTGTAATCAGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCC 373950 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||| |||| || ||||| || |||||||| ||||| || ||||| Sbjct 373951 AGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTCTTG 373998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743032624117760