Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq20296 118 7e-22 seq50574 109 4e-19 seq50758 105 4e-18 seq17618 104 2e-17 seq49251 100 2e-16 seq51452 96.9 2e-15 seq7668 96.9 2e-15 seq32633 82.4 5e-11 >seq20296 Length=523354 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| ||| ||||| |||||||| || | || ||| | || Sbjct 452952 AGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCC 452893 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || ||||||||||||||||||||||| || | || |||||||| Sbjct 452892 TCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 452833 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | | || | |||| |||||||| || | |||||||| Sbjct 452832 TGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 452773 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 452772 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 452740 >seq50574 Length=377344 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||||||||| || | || || ||||| ||||||||||| | Sbjct 94592 TCCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 94651 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || ||||||||||| ||||| || || |||| ||||||||| ||| Sbjct 94652 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAATATTAGCCTCTGCTGGTCTGGGGG 94711 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | || | ||||| Sbjct 94712 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAACTCTCGAC 94771 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| ||||| || ||||||||||| Sbjct 94772 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 94819 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| ||||| |||||||| |||| || |||| |||| Sbjct 95064 AGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCC 95123 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || |||| ||||| || ||| | | |||||||| Sbjct 95124 TCAAGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGATCTGGGGGAATTCCTTCCTTGTCC 95183 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | | || | |||| ||||| || | |||||||| Sbjct 95184 TGGAT-TTTGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATGGT 95242 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || |||||||| |||||||||||| Sbjct 95243 CTTTCCGGTAAGGGTTTTCACGAAGATCTGCATC 95276 >seq50758 Length=122349 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| ||| ||||| ||||||||||||| || | | |||| Sbjct 118019 AGCACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCT 117960 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || |||| ||||||||| || | | |||||||| Sbjct 117959 TCGAGCTGCTTTCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCC 117900 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| ||| || || | ||||| ||| Sbjct 117899 TGAATCTTCGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTT 117840 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || ||||||||||||||||||||| Sbjct 117839 TTACCGGTTAGGGTTTTCACAAAGATCTGCATC 117807 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || |||| ||| | ||| || ||||| |||||||| || | Sbjct 118490 CCGCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCG 118431 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || || || || |||| |||||||| || Sbjct 118430 AGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGA 118371 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| ||| || Sbjct 118370 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCCACC 118311 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || || | ||| |||||||| |||||||| Sbjct 118310 TCCAAAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 118264 Score = 82.4 bits (90), Expect = 5e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || ||||| ||||| || || || || |||| |||||| || ||| | | ||||||| Sbjct 118874 TCTTCCAATTGCTTCCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTG 118815 Query 34295 TCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || ||||| ||||| | || | | || | ||| | ||| || |||| ||||| Sbjct 118814 TCCTGAATCTTA-GCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGAT 118756 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||| ||||| | ||||||||||| ||||||||| Sbjct 118755 GGTTTTCCCGGTCAACGTTTTCACAAAAATCTGCATC 118719 >seq17618 Length=194525 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| |||||||| |||| || ||| |||| Sbjct 71833 AGCACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCT 71892 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| || |||||||| || ||| | | |||||||| Sbjct 71893 TCAAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCT 71952 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | |||| ||||| || || | ||||| || Sbjct 71953 TGGATCTTG-GCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 72011 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || || || |||||||| |||||||||||| Sbjct 72012 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 72045 >seq49251 Length=53185 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| ||| ||||| |||||||| |||| || ||| |||| Sbjct 47167 AGCACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCT 47226 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||||| || |||||||| || ||| | | |||||||| Sbjct 47227 TCAAGCTGCTTTCCGCCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCT 47286 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | |||| ||||| || || | ||||| || Sbjct 47287 TGGATCTTG-GCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 47345 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || | || |||||||| |||||||||||| Sbjct 47346 TTTACCCGCTAGGGTTTTCACGAAGATCTGCATC 47379 >seq51452 Length=252770 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 |||||| || | |||||||||||| || || | |||| || ||||| || ||||| || Sbjct 3835 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATC 3894 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || | | || ||||||||||| || || || || |||| ||||||||| Sbjct 3895 AGCAAGTGTCCTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGG 3954 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | || |||||| || |||||| ||| | || | | |||| || | || Sbjct 3955 TGGAATGCCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATCGTGTCTGAGCTCTC 4014 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 4015 AACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 4065 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| || || ||||| | ||| || || || || || || || | || ||| Sbjct 4760 AGCCTGAGAACTAGGTGGAGAGTTGACTCCTTTTGAATATTATAATCTGCGAGAGTACGC 4819 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || |||| ||||| ||||| || || |||| |||||| || || | | |||| Sbjct 4820 CCATCTTCCAGTTGCTTCCCTGCAAATATCAGCCTCTGCTGATCCGGTGGGATACCCTCC 4879 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||| || ||| | || | |||| | || | ||| || |||| ||| Sbjct 4880 TTGTCTTGTATTTTCGCCTTAACATTGTCTATGGTGTCCGAGCTTTCAACTTCCAGTGTG 4939 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || || || ||||| ||||||||||||||| Sbjct 4940 ATGGTTTTTCCAGTTAGGGTTTTAACAAAGATCTGCATC 4978 >seq7668 Length=316181 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| |||||||| |||| || ||| |||| Sbjct 198730 AGCACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCT 198671 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 | | |||||| || |||||||| || |||||||| || ||| | | |||||||| Sbjct 198670 TTAAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCT 198611 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| || | || | | || | |||| ||||| || || | ||||| ||| Sbjct 198610 TGGATCTTGGATTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTT 198551 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 198550 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 198518 >seq32633 Length=132462 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || |||||||| | ||| ||| ||||| ||||| || || Sbjct 60199 AAGCCACCACGGAGGCGAAGAACCAGGTGAAGAGTTGATTCCTTCTGAATGTTATAATCA 60258 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | || ||| | || |||| |||||| || || ||||| |||| ||||||||| Sbjct 60259 GCAAGGGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGT 60318 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | ||||| || |||||| ||| | | | | || | ||||| || Sbjct 60319 GGAATACCTTCCTTATCCTGAATCTTTGCCTTCACGTTGTCAATAGTATCGGAGCTCTCT 60378 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || |||| || || || || || || || || || ||||||||||||||| ||| Sbjct 60379 ACCTCCAAGGTAATCGTCTTCCCAGTCAGCGTCTTGACAAAGATCTGCATCCCTC 60433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322862811687680