Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq44697 183 3e-41 seq38302 159 3e-34 >seq44697 Length=182102 Score = 183 bits (202), Expect = 3e-41 Identities = 578/890 (65%), Gaps = 17/890 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || |||||||| || | ||||||||| ||||||||||| || || ||| Sbjct 112965 GACATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 113024 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | ||| ||| ||||| ||||||| ||||| | | | || | ||||| | Sbjct 113025 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAA 113084 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| | ||| |||||||| ||||||||||| || || | |||| ||||| | Sbjct 113085 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 113144 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | | | ||| | || || | ||| | ||||||| | || Sbjct 113145 TTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACA 113204 Query 16169 GCTTC---AATGATTA---TATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGT 16222 || || || ||| || ||| | | || || | | | |||| || Sbjct 113205 GCATCTGCAACAATTCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTTAACAAACTA 113261 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 | || || ||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 113262 TAAAGCAA---ACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTC 113318 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 || || || | || ||||||| || || ||||| | ||| |||||||| ||| Sbjct 113319 GAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTT 113378 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 || || || || |||||||| || |||||||||||||| ||||| | | ||| Sbjct 113379 CCGGAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTT--- 113435 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | || || ||||| | ||||| || || || | | ||||||| || || Sbjct 113436 TCGGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTC 113495 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || | ||| ||||| ||||||| | || || || | |||| || Sbjct 113496 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGC 113555 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCT 16581 | ||| ||||| || || || || || || || || || || || || || |||||| | Sbjct 113556 AGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CG 113614 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 || |||| | ||| ||||| |||||| | |||| |||||| ||| || || Sbjct 113615 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 113674 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701 || || |||||||| ||||| | ||| | || |||| |||| || || Sbjct 113675 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 113734 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 || ||||| | ||| || |||||||| ||||| ||||||| ||||| || Sbjct 113735 GGTTTCCCAGTGACGGTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGC 113794 Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || ||||| ||||||| ||| || | | ||| ||| || |||| Sbjct 113795 TAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 113844 >seq38302 Length=59671 Score = 159 bits (176), Expect = 3e-34 Identities = 572/890 (64%), Gaps = 17/890 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || |||||||| || | ||||||||| ||||||||||| || || ||| Sbjct 22785 GACATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 22844 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | ||| ||| ||||| ||||||| ||||| | | | || | |||| | Sbjct 22845 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAA 22904 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| | ||| |||||||| ||||||||||| || || | |||| ||||| | Sbjct 22905 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 22964 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | | | ||| | || || | ||| | ||||||| | || Sbjct 22965 TTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACA 23024 Query 16169 GCTTC------AATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGT 16222 || || ||| || ||| | | || || | | | | || || Sbjct 23025 GCATCTGCAACAATCCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTCAACAAACTA 23081 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 | || || |||||| |||||||| ||||| ||||||||||| ||||||||||| Sbjct 23082 TAAAGCAA---ACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTC 23138 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 || || || | || ||||||| || || ||||| | ||| |||||||| ||| Sbjct 23139 GAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTT 23198 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 ||||| || || |||||||| || | |||||||||||| ||||| | | ||| Sbjct 23199 CCAGAGAAAAAAATACCTTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTT--- 23255 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | || || ||||| | ||||| || || || | | ||||||| || || Sbjct 23256 TCGGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTC 23315 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || | ||| ||||| ||||||| | || || || | |||| || Sbjct 23316 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGC 23375 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCT 16581 | ||| ||||| || || || || || || || || || || || || || |||||| | Sbjct 23376 AGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CG 23434 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 || |||| | ||| ||||| ||||| | |||| |||||| ||| || || Sbjct 23435 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCC 23494 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701 || || |||||||| ||||| | ||| | || |||| |||| || || Sbjct 23495 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 23554 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 || ||||| | ||| ||||||||||| ||||| ||||||| ||||| || Sbjct 23555 GGTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGC 23614 Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || ||||| ||||||| ||| || | | ||| ||| || |||| Sbjct 23615 TAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 23664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462204845780800