Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 183 3e-41
seq38302 159 3e-34
>seq44697
Length=182102
Score = 183 bits (202), Expect = 3e-41
Identities = 578/890 (65%), Gaps = 17/890 (2%)
Strand=Plus/Plus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || |||||||| || | ||||||||| ||||||||||| || || |||
Sbjct 112965 GACATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 113024
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
| ||| ||| ||||| ||||||| ||||| | | | || | ||||| |
Sbjct 113025 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAA 113084
Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108
||||| | ||| |||||||| ||||||||||| || || | |||| ||||| |
Sbjct 113085 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 113144
Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168
|||||||| | | | ||| | || || | ||| | ||||||| | ||
Sbjct 113145 TTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACA 113204
Query 16169 GCTTC---AATGATTA---TATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGT 16222
|| || || ||| || ||| | | || || | | | |||| ||
Sbjct 113205 GCATCTGCAACAATTCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTTAACAAACTA 113261
Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282
| || || ||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 113262 TAAAGCAA---ACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTC 113318
Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342
|| || || | || ||||||| || || ||||| | ||| |||||||| |||
Sbjct 113319 GAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTT 113378
Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402
|| || || || |||||||| || |||||||||||||| ||||| | | |||
Sbjct 113379 CCGGAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTT--- 113435
Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462
| || || ||||| | ||||| || || || | | ||||||| || ||
Sbjct 113436 TCGGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTC 113495
Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522
|| | ||| ||||| ||||||| | || || || | |||| ||
Sbjct 113496 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGC 113555
Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCT 16581
| ||| ||||| || || || || || || || || || || || || || |||||| |
Sbjct 113556 AGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CG 113614
Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641
|| |||| | ||| ||||| |||||| | |||| |||||| ||| || ||
Sbjct 113615 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 113674
Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701
|| || |||||||| ||||| | ||| | || |||| |||| || ||
Sbjct 113675 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 113734
Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761
|| ||||| | ||| || |||||||| ||||| ||||||| ||||| ||
Sbjct 113735 GGTTTCCCAGTGACGGTTATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGC 113794
Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
| || ||||| ||||||| ||| || | | ||| ||| || ||||
Sbjct 113795 TAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 113844
>seq38302
Length=59671
Score = 159 bits (176), Expect = 3e-34
Identities = 572/890 (64%), Gaps = 17/890 (2%)
Strand=Plus/Plus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || |||||||| || | ||||||||| ||||||||||| || || |||
Sbjct 22785 GACATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 22844
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
| ||| ||| ||||| ||||||| ||||| | | | || | |||| |
Sbjct 22845 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAA 22904
Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108
||||| | ||| |||||||| ||||||||||| || || | |||| ||||| |
Sbjct 22905 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 22964
Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168
|||||||| | | | ||| | || || | ||| | ||||||| | ||
Sbjct 22965 TTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACA 23024
Query 16169 GCTTC------AATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGT 16222
|| || ||| || ||| | | || || | | | | || ||
Sbjct 23025 GCATCTGCAACAATCCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTCAACAAACTA 23081
Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282
| || || |||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct 23082 TAAAGCAA---ACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTC 23138
Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342
|| || || | || ||||||| || || ||||| | ||| |||||||| |||
Sbjct 23139 GAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTT 23198
Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402
||||| || || |||||||| || | |||||||||||| ||||| | | |||
Sbjct 23199 CCAGAGAAAAAAATACCTTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTT--- 23255
Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462
| || || ||||| | ||||| || || || | | ||||||| || ||
Sbjct 23256 TCGGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTC 23315
Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522
|| | ||| ||||| ||||||| | || || || | |||| ||
Sbjct 23316 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGC 23375
Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCT 16581
| ||| ||||| || || || || || || || || || || || || || |||||| |
Sbjct 23376 AGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CG 23434
Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641
|| |||| | ||| ||||| ||||| | |||| |||||| ||| || ||
Sbjct 23435 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCC 23494
Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701
|| || |||||||| ||||| | ||| | || |||| |||| || ||
Sbjct 23495 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 23554
Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761
|| ||||| | ||| ||||||||||| ||||| ||||||| ||||| ||
Sbjct 23555 GGTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGC 23614
Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
| || ||||| ||||||| ||| || | | ||| ||| || ||||
Sbjct 23615 TAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 23664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462204845780800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |