Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3114 109 4e-19 seq50574 107 2e-18 seq33627 105 5e-18 seq50758 98.7 8e-16 seq19192 98.7 8e-16 seq32633 93.3 3e-14 seq3636 93.3 3e-14 seq51452 84.2 2e-11 >seq3114 Length=370656 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| || |||||||| ||| || | || || || || Sbjct 9880 GTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTG 9939 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||||||||| ||||| ||||| | || ||||||||| ||| || Sbjct 9940 CTTACCTGCGAAAATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGAATCTT 9999 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||| ||||| | |||||| ||||| ||||| Sbjct 10000 AGCCTTGACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCCGT 10059 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 ||| |||||||| || || ||||| || || Sbjct 10060 CAGGGTCTTCACGAATATCTGCATCTTTCC 10089 >seq50574 Length=377344 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||| || | ||||| ||||| ||| ||||||||||||||||||||| Sbjct 94593 CCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 94652 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || |||| || ||||| || ||||| | || ||| ||||| || || Sbjct 94653 AGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAATATTAGCCTCTGCTGGTCTGGGGGA 94712 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | |||| || ||| ||| Sbjct 94713 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAACTCTCGACC 94772 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| || || || || || ||||| ||||| Sbjct 94773 TCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 94819 >seq33627 Length=115891 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | || ||||| || || || ||||||||| ||||| ||||| Sbjct 50654 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGCCTCCTTCTGGATGTTATAGTCCGCA 50595 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| ||||||||||| || || || ||||| ||||| ||||| || || Sbjct 50594 AGAGTCCTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 50535 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| ||| || || | | | | || || ||| ||| Sbjct 50534 ATACCCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCAGAACTCTCAACC 50475 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || ||||| || |||| |||||| ||||| || |||||| Sbjct 50474 TCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATATGCATG 50427 >seq50758 Length=122349 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||| || || || |||| || Sbjct 118472 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCGAGGGTTCGGCCGTCTTCA 118413 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| |||||||| || |||| || || ||||| || || | ||||||||||||| | Sbjct 118412 AGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 118353 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||||||||| || || || || Sbjct 118352 ATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTTTTC 118293 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||| || ||||| Sbjct 118292 CCAGTCAAAGTCTTCACAAAAATCTGCAT 118264 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| |||||||||||| || | |||| || Sbjct 118016 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCTTCG 117957 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||||||||||| || ||| ||||| || || | || ||||||||| | Sbjct 117956 AGCTGCTTTCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGA 117897 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | |||| | || ||||| | ||| || || || Sbjct 117896 ATCTTCGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTTTA 117837 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||||||||| ||||| Sbjct 117836 CCGGTTAGGGTTTTCACAAAGATCTGCAT 117808 >seq19192 Length=430667 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG-TCGTC 45186 ||||| || || || ||||||||||| ||||| || | || | | || || || Sbjct 373652 ACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC-TGCAAGGGTCCTTCCATCCTC 373710 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||||| || || |||||||||| ||| ||||| ||||| | ||||||||||||| Sbjct 373711 AAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 373770 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| ||| || | | | | || | ||| || || | ||| |||||||| Sbjct 373771 GATCTTTGCCTTTACATTGTCGATGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTT 373830 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||| | ||| || ||||| || |||||| Sbjct 373831 GCCCGTTAAAGTTTTAACAAAAATCTGCATG 373861 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | || |||| || || || ||||||||| ||||| || || Sbjct 373406 CCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCA 373465 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| | | || || ||||| || || || ||||||| ||||| ||||| || || Sbjct 373466 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAGTCGCTGCTGGTCTGGGGGA 373525 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| |||||| ||| || | | ||||| || ||| ||| Sbjct 373526 ATCCCTTCCTTGTCTTGAATTTTGGCCTTCACATTATCAATTGTGTCCGAACTCTCAACC 373585 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || || || || |||| |||||| ||||||||||||||| Sbjct 373586 TCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACAAAGATTTGCATG 373633 >seq32633 Length=132462 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||||||||||| || || || ||| | || ||| Sbjct 60220 ACCAGGTGAAGAGTTGATTCCTTCTGAATGTTATAATCAGCAAGGGTACGACCATCCTCC 60279 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | ||| ||||| ||| | Sbjct 60280 AGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGA 60339 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | || | ||| ||||||| |||||||||||| Sbjct 60340 ATCTTTGCCTTCACGTTGTCAATAGTATCGGAGCTCTCTACCTCCAAGGTAATCGTCTTC 60399 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| |||||||| ||||| Sbjct 60400 CCAGTCAGCGTCTTGACAAAGATCTGCAT 60428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| | | || | ||| || ||| |||||| || ||||||||||| Sbjct 61114 CCACCACGCAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 61173 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || ||||| ||||| || || ||||||| || || || ||||| Sbjct 61174 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 61233 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| ||| ||| |||||| | | |||| | ||| ||| Sbjct 61234 ATACCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACC 61293 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || | ||| || |||||||| ||||| Sbjct 61294 TCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 61340 >seq3636 Length=134301 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||| || |||||||||||| || ||| | || || || || Sbjct 15374 GTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCTAGCTG 15315 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || ||||||| ||| || |||||||| | || ||||||||| ||| || Sbjct 15314 CTTTCCAGCAAAGATCAACCTCTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGAATCTT 15255 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| || ||| ||||| | ||||| || || || || Sbjct 15254 AGCCTTGACATTATCAATAGTGTCGGAACTCTCAACCTCGAGAGTAATGGTTTTTCCGGT 15195 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| Sbjct 15194 GAGCGTCTTTACAAAGATTTGCAT 15171 >seq51452 Length=252770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || |||| |||||| || || || |||| | ||| ||||| || || | ||||||||| Sbjct 58516 TCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTA 58575 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | | | || || ||||||||||| || ||| Sbjct 58576 TCCTGTATCTTGGCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAACGTGATC 58635 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||||||| ||||||||||||| |||||| Sbjct 58636 GTCTTCCCCGTCAACGTCTTCACAAAGACCTGCATG 58671 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| |||||||| ||||| || | | || |||| |||||| || || || Sbjct 4102 CTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAA 4161 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| | ||| ||||| || || | ||||||||| ||| || || ||| || Sbjct 4162 AATCAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGTATCTTGGCCTTCACATT 4221 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || || |||||| |||| || |||||||| ||||| | |||||||| Sbjct 4222 GTCAATGGTATCAGAACTCTCCACTTCCAACGTGATCGTCTTCCCCGTTAACGTCTTCAC 4281 Query 45325 AAAGATTTGCATG 45337 |||||| |||||| Sbjct 4282 AAAGATCTGCATG 4294 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTC---AGT-TGGCGATCGTCGTCCAGTTGTTTTCCGG 45200 |||||| ||||| ||||| || | | ||| || | ||| ||| || |||||||| | Sbjct 59163 CTCCTTTTGAATATTGTAATC-TGCGAGAGTATGCCCATCCTCG---AGCTGTTTTCCTG 59218 Query 45201 CGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAA 45260 |||| ||||| || ||||| || || || | ||| || |||||| ||||| |||| Sbjct 59219 CGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTAA 59278 Query 45261 CCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCT 45320 | | | |||| || ||| || || | || | |||||||| ||||| |||| Sbjct 59279 CATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTCTTGCCAGTCAGGGTCT 59338 Query 45321 TCACAAAGATTTGCAT 45336 |||||||||| ||||| Sbjct 59339 TCACAAAGATCTGCAT 59354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394819389795688