Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq51452 113 3e-20 seq48040 91.5 1e-13 seq50758 87.8 1e-12 seq50574 82.4 6e-11 >seq51452 Length=252770 Score = 113 bits (124), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| || Sbjct 58215 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 58274 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||||||||| || || ||| | || || ||||| |||||| || Sbjct 58275 AAGAGTCCTCCCATCTTCCAATTGCTTTCCTGCAAATATCAGCCTTTGCTGATCCGGTGG 58334 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC--- 18274 | ||||||||| || ||||| | ||| || | ||| |||| ||| |||| Sbjct 58335 GATGCCTTCCTTGTCTTGAATTTTTGCCTTAACATTGTCAATCGTGT--CCGAGCTCTCA 58392 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||| ||||| |||| || || || || || ||||| ||||||||| Sbjct 58393 ACTTCCAAT-GTGATTGTTTTCCCAGTTAAGGTCTTAACAAAGATTTGCATT 58443 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | ||| |||||||| || |||||||| || || || || Sbjct 58899 TCCACCACGAAGGCGGAGGACTAGGTGGAGTGTTGACTCCTTTTGAATATTATAATCTGC 58958 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||||||| || || ||| | || ||||||||||| ||| || Sbjct 58959 CAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAATCAGTCTTTGTTGGTCCGGTGG 59018 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| ||| || | ||| ||| || | ||| Sbjct 59019 AATACCTTCCTTATCTTGAATTTTCGTCTTAACATTATCAATAGTATCCGAGCTCTCAAC 59078 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| |||| ||||| |||||||| || |||||||||||| Sbjct 59079 TTCCAACGTGATTGTTTTTCCGGTTAATGTTTTAACGAAAATTTGCATT 59127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || |||||||| ||||| || || Sbjct 4522 TCCACCACGGAGACGAAGAACAAGGTGGAGTGTTGACTCCTTTTGAATATTGTAATCAGC 4581 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| || | ||||| || ||| |||| | | ||||||||| || Sbjct 4582 GAGAGTCCGTCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGCGG 4641 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | ||||||||||| |||| ||| || | ||| |||| ||| || ||| Sbjct 4642 AATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGT--CCGAGCTTTCG 4699 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| |||| || ||||| ||||| ||||||||||||||| Sbjct 4700 ACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTTTAACAAAAATTTGCATT 4750 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| || Sbjct 4066 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 4125 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||||||||||||||| || ||| | || ||||| || || || || Sbjct 4126 AAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGTGG 4185 Query 18218 CACGCCTTCCTTATC 18232 | || |||||||| Sbjct 4186 GATACCCTCCTTATC 4200 >seq48040 Length=167738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| ||||||||||| ||||||||||| || || Sbjct 54781 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 54722 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||| ||||| || ||| | || ||||| || ||||| || Sbjct 54721 CAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 54662 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 54661 TATGCCTTCTTTATC 54647 >seq50758 Length=122349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| || || || || ||||||||||| || || Sbjct 118263 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGC 118204 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||| |||||||| ||| |||| | || || ||||| || Sbjct 118203 TAGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 118144 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || ||||| ||| | ||| || | ||| ||||| | ||| Sbjct 118143 GATTCCCTCTTTATCCTGAATCTTCGCCTTAACGTTGTCAATTGTGTCGGAGCTTTCGAC 118084 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| |||| ||||| | ||||| ||||| |||||||| Sbjct 118083 TTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACAAAGATTTGCAT 118036 >seq50574 Length=377344 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| || || || || || || |||||||||||||| || Sbjct 94592 TCCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 94651 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||||||||| || || || ||| | || || || || || || ||| Sbjct 94652 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAATATTAGCCTCTGCTGGTCTGGGGG 94711 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||||| | ||| |||||| |||| Sbjct 94712 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAACTCTCGAC 94771 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | |||||||| | ||||| || || || ||||| Sbjct 94772 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 94819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379098375708360