Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq51452 113 3e-20
seq48040 91.5 1e-13
seq50758 87.8 1e-12
seq50574 82.4 6e-11
>seq51452
Length=252770
Score = 113 bits (124), Expect = 3e-20
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| ||
Sbjct 58215 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 58274
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | | |||||||||||| || || ||| | || || ||||| |||||| ||
Sbjct 58275 AAGAGTCCTCCCATCTTCCAATTGCTTTCCTGCAAATATCAGCCTTTGCTGATCCGGTGG 58334
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC--- 18274
| ||||||||| || ||||| | ||| || | ||| |||| ||| ||||
Sbjct 58335 GATGCCTTCCTTGTCTTGAATTTTTGCCTTAACATTGTCAATCGTGT--CCGAGCTCTCA 58392
Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| |||| ||||| |||| || || || || || ||||| |||||||||
Sbjct 58393 ACTTCCAAT-GTGATTGTTTTCCCAGTTAAGGTCTTAACAAAGATTTGCATT 58443
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || || | ||| |||||||| || |||||||| || || || ||
Sbjct 58899 TCCACCACGAAGGCGGAGGACTAGGTGGAGTGTTGACTCCTTTTGAATATTATAATCTGC 58958
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| || | |||||||||||| || || ||| | || ||||||||||| ||| ||
Sbjct 58959 CAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAATCAGTCTTTGTTGGTCCGGTGG 59018
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||||| ||||| ||| || | ||| ||| || | |||
Sbjct 59019 AATACCTTCCTTATCTTGAATTTTCGTCTTAACATTATCAATAGTATCCGAGCTCTCAAC 59078
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | ||||| |||| ||||| |||||||| || ||||||||||||
Sbjct 59079 TTCCAACGTGATTGTTTTTCCGGTTAATGTTTTAACGAAAATTTGCATT 59127
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||| || | ||| |||||||| || |||||||| ||||| || ||
Sbjct 4522 TCCACCACGGAGACGAAGAACAAGGTGGAGTGTTGACTCCTTTTGAATATTGTAATCAGC 4581
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | ||| || | ||||| || ||| |||| | | ||||||||| ||
Sbjct 4582 GAGAGTCCGTCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGCGG 4641
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275
| ||||||||||| |||| ||| || | ||| |||| ||| || |||
Sbjct 4642 AATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGT--CCGAGCTTTCG 4699
Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | ||||| |||| || ||||| ||||| |||||||||||||||
Sbjct 4700 ACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTTTAACAAAAATTTGCATT 4750
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| ||
Sbjct 4066 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 4125
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | | ||||||||||||||| || ||| | || ||||| || || || ||
Sbjct 4126 AAGAGTCCTCCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGTGG 4185
Query 18218 CACGCCTTCCTTATC 18232
| || ||||||||
Sbjct 4186 GATACCCTCCTTATC 4200
>seq48040
Length=167738
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||||| || || | || | |||||| ||||||||||| ||||||||||| || ||
Sbjct 54781 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 54722
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| || | ||||||||| ||||| || ||| | || ||||| || ||||| ||
Sbjct 54721 CAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 54662
Query 18218 CACGCCTTCCTTATC 18232
| |||||| |||||
Sbjct 54661 TATGCCTTCTTTATC 54647
>seq50758
Length=122349
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || |||| |||||| || || || || ||||||||||| || ||
Sbjct 118263 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGC 118204
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | ||||||||| |||||||| ||| |||| | || || ||||| ||
Sbjct 118203 TAGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 118144
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || || ||||| ||| | ||| || | ||| ||||| | |||
Sbjct 118143 GATTCCCTCTTTATCCTGAATCTTCGCCTTAACGTTGTCAATTGTGTCGGAGCTTTCGAC 118084
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||||| |||| ||||| | ||||| ||||| ||||||||
Sbjct 118083 TTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACAAAGATTTGCAT 118036
>seq50574
Length=377344
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||||| || || || |||| || || || || || || |||||||||||||| ||
Sbjct 94592 TCCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 94651
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || || ||||||||| || || || ||| | || || || || || || |||
Sbjct 94652 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAATATTAGCCTCTGCTGGTCTGGGGG 94711
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || ||||| || || | |||||| | ||| |||||| ||||
Sbjct 94712 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAACTCTCGAC 94771
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| ||||||| | |||||||| | ||||| || || || |||||
Sbjct 94772 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 94819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379098375708360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |