Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq44697 179 5e-40 seq38302 179 5e-40 >seq44697 Length=182102 Score = 179 bits (198), Expect = 5e-40 Identities = 565/872 (65%), Gaps = 10/872 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| || || || || | || || || |||||||| || |||| || || Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||||||||| | ||||||| | || | | | ||||| || | | Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 |||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | || || || || | ||| || ||| || || |||| || | ||| Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219 Query 33531 AATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 |||| ||| ||| | | | | | | || | |||| |||||| || | Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAAAG--CAAACAAGCAA 113277 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 |||| ||||||| ||| ||||| ||| |||||| ||||| || || || | ||| |||| Sbjct 113278 AATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGCA 113337 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 ||| || |||||||| | ||| ||||| | | || |||||| || || || |||| Sbjct 113338 TTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGGAGAAAAAAATACCTT 113397 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCACT 33765 | || |||||| |||| | | ||| || | ||| | ||| ||||| Sbjct 113398 CCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAAC 113454 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 113455 GTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATC 113514 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | ||||||| | | || || | || | || | | ||||| ||||| || || | Sbjct 113515 TGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGT 113574 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | ||||||||||| || || || || ||||||||| | ||||||| || || |||| Sbjct 113575 GGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTT 113634 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 || | || | | | |||| ||||| || || || || ||| |||||||| | Sbjct 113635 CTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGG 113694 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 34065 | | || || | || |||| |||| | |||||||| | | ||| | | | ||| Sbjct 113695 CAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTTAT 113754 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | ||| | ||| |||||||| | ||||| || || || || ||||| ||||| | Sbjct 113755 CAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTT 113814 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATA 34157 ||| || | | ||||| |||||||| ||| Sbjct 113815 CCCAAATTTGTGGGTATTGAATTGGGAACATA 113846 >seq38302 Length=59671 Score = 179 bits (198), Expect = 5e-40 Identities = 565/872 (65%), Gaps = 10/872 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| || || || || | || || || |||||||| || |||| || || Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||||||||| | ||||||| | || ||| | ||||| || | | Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 |||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | || || || || | ||| || ||| || || |||| || | ||| Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039 Query 33531 AATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 |||| ||| ||| | | | | | | || | |||| |||||| |||| Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAACTATAAAG--CAAACAAGCGA 23097 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 |||| ||||||| ||| ||||| || |||||| ||||| || || || | ||| |||| Sbjct 23098 AATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCA 23157 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 ||| || |||||||| | ||| ||||| | | || ||| || || || || |||| Sbjct 23158 TTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCAGAGAAAAAAATACCTT 23217 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCACT 33765 | || || ||| |||| | | ||| || | ||| | ||| ||||| Sbjct 23218 CCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAAC 23274 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 23275 GTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAATC 23334 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | ||||||| | | || || | || | || | | ||||| ||||| || || | Sbjct 23335 TGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGT 23394 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | ||||||||||| || || || || ||||||||| | ||||||| || || |||| Sbjct 23395 GGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTT 23454 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 || | || | | |||| ||||| || || || || ||| |||||||| | Sbjct 23455 CTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGG 23514 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 34065 | | || || | || |||| |||| | |||||||| | | ||| | | | ||| Sbjct 23515 CAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGTAT 23574 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | ||||| ||| ||||||||| | ||||| || || || || ||||| ||||| | Sbjct 23575 CGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTT 23634 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATA 34157 ||| || | | ||||| |||||||| ||| Sbjct 23635 CCCAAATTTGTGGGTATTGAATTGGGAACATA 23666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629399338131840