Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq49945 120 3e-22 seq44697 107 2e-18 seq38302 98.7 9e-16 seq32446 95.1 1e-14 >seq49945 Length=41976 Score = 120 bits (132), Expect = 3e-22 Identities = 171/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 |||||| ||||||||| |||||||||||||| ||||||||||| |||||||| || Sbjct 17056 TTGAGGTCTTGGAGTTCCAGCGTTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTG 17115 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || |||||| | ||| || || | ||| Sbjct 17116 AGACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGA 17175 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA---TTATTCTGTTTAAGTAG 38576 ||| ||||| ||||| |||||||| ||||||| | |||| | | || |||||| || Sbjct 17176 TACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATC--TTTAAG-AG 17232 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || | || | ||||| | ||||| ||| ||| | | ||||| || ||| Sbjct 17233 GTAAGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATAT 17290 >seq44697 Length=182102 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||||||||| || ||||||||||| ||| |||| || || || || ||| Sbjct 113268 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTT 113327 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || || ||||||| ||| ||||||||| ||| || || || Sbjct 113328 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGGAGAAA 113387 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC 11775 || || || |||||| |||||||| || Sbjct 113388 AAAATACCTTCCACACAAGCAAATGCAAC 113416 >seq38302 Length=59671 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| || |||||||| || ||||||||||| || |||| || || || || ||| Sbjct 23088 AAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 23147 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || || ||||||| ||| ||||||||| ||| ||||| || Sbjct 23148 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCAGAGAAA 23207 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC 11775 || || || |||||| | |||||| || Sbjct 23208 AAAATACCTTCCACACAAGAAAATGCAAC 23236 >seq32446 Length=65746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 38395 GACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACC 38452 ||||| ||||||| ||||||||| || ||||| | || ||||| ||||| |||||| Sbjct 52258 GACATACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACC 52199 Query 38453 ATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512 || ||| |||| ||| ||| || | || || || |||||| | ||| || | Sbjct 52198 ATCTTTGAGACATCAAATGATAAGTCTTGATAGCAGATTCAATATCATCCTTGTGGATTC 52139 Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 | | ||| || ||||| |||||||||||||| ||||||| Sbjct 52138 CAACAGAAACTCTCATCAGCATATGTTGTGGCCTTTCTA 52100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468213652680320