Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq38302 192 8e-44
seq44697 183 4e-41
>seq38302
Length=59671
Score = 192 bits (212), Expect = 8e-44
Identities = 570/874 (65%), Gaps = 14/874 (2%)
Strand=Plus/Plus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
||||| || || || || | || || || |||||||| || |||| ||| ||
Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986
||||| |||| || ||||| | |||| || | || ||| | ||||| || | |
Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919
Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046
|||||||| || |||||||| || ||| | |||||| || | ||||||||| | ||
Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979
Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106
| || || || || | ||| || ||| || || || |||| | |||
Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039
Query 36107 GATATTACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATGCG 36163
| ||| ||| ||| | | | ||| ||| || | | |||||| |||
Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAAC---TATAAAGCAAACAAGCG 23096
Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223
||||| ||||| | ||| ||||| || |||||| ||||| || || || | ||| |||
Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156
Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 36282
|||| || |||||||| | ||| ||||| | | |||| | | ||||| || ||||| ||
Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCAGAGAAAAAAATACC 23215
Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCCA 36339
||| || | ||| |||| | | ||| || | ||| || ||| |||||
Sbjct 23216 TTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCA 23272
Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399
| | ||||| | |||||||| | ||||| || || ||||| | || || |
Sbjct 23273 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAA 23332
Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459
| ||||||| | | || || | || | || | | ||||| ||||| || ||
Sbjct 23333 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 23392
Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519
|| ||||||||||| || ||||| || ||||||||| | ||||||| || || ||
Sbjct 23393 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGAC 23452
Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579
|||| | || | | |||| ||||| || || ||||| ||| ||||||||
Sbjct 23453 TTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 23512
Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639
|| | || || | || |||| |||| |||||||| | | ||| | | | |
Sbjct 23513 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGT 23572
Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699
||| ||||| ||| ||||||||| | ||||| || || || || ||||| |||||
Sbjct 23573 ATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 23632
Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733
| ||| || | | ||||||||||| || |||
Sbjct 23633 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 23666
>seq44697
Length=182102
Score = 183 bits (202), Expect = 4e-41
Identities = 569/874 (65%), Gaps = 14/874 (2%)
Strand=Plus/Plus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
||||| || || || || | || || || |||||||| || |||| ||| ||
Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986
||||| |||| || ||||| | |||| || | || | | | ||||| || | |
Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099
Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046
|||||||| || |||||||| || ||| | |||||| || | ||||||||| | ||
Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159
Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106
| || || || || | ||| || ||| || || || |||| | |||
Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219
Query 36107 GATATTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGCG 36163
| ||| ||| ||| | | | | | || ||| || | | |||||| ||
Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCA 113276
Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223
||||| ||||| | ||| ||||| ||| |||||| ||||| || || || | ||| |||
Sbjct 113277 AAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGC 113336
Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 36282
|||| || |||||||| | ||| ||||| | | |||| | | || || || ||||| ||
Sbjct 113337 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCGGAGAAAAAAATACC 113395
Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCCA 36339
||| || ||||| |||| | | ||| || | ||| || ||| |||||
Sbjct 113396 TTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCA 113452
Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399
| | ||||| | |||||||| | ||||| || || ||||| | || || |
Sbjct 113453 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAA 113512
Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459
| ||||||| | | || || | || | || | | ||||| ||||| || ||
Sbjct 113513 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 113572
Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519
|| ||||||||||| || ||||| || ||||||||| | ||||||| || || ||
Sbjct 113573 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGAC 113632
Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579
|||| | || | | | |||| ||||| || || ||||| ||| ||||||||
Sbjct 113633 TTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 113692
Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639
|| | || || | || |||| |||| |||||||| | | ||| | | | |
Sbjct 113693 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTT 113752
Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699
||| ||| | ||| |||||||| | ||||| || || || || ||||| |||||
Sbjct 113753 ATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 113812
Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733
| ||| || | | ||||||||||| || |||
Sbjct 113813 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657735707443520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |