Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq38302 192 8e-44 seq44697 183 4e-41 >seq38302 Length=59671 Score = 192 bits (212), Expect = 8e-44 Identities = 570/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||| || || || || | || || || |||||||| || |||| ||| || Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| || ||||| | |||| || | || ||| | ||||| || | | Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 |||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039 Query 36107 GATATTACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATGCG 36163 | ||| ||| ||| | | | ||| ||| || | | |||||| ||| Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAAC---TATAAAGCAAACAAGCG 23096 Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||||| | ||| ||||| || |||||| ||||| || || || | ||| ||| Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 36282 |||| || |||||||| | ||| ||||| | | |||| | | ||||| || ||||| || Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCAGAGAAAAAAATACC 23215 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCCA 36339 ||| || | ||| |||| | | ||| || | ||| || ||| ||||| Sbjct 23216 TTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCA 23272 Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 | | ||||| | |||||||| | ||||| || || ||||| | || || | Sbjct 23273 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAA 23332 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 | ||||||| | | || || | || | || | | ||||| ||||| || || Sbjct 23333 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 23392 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 || ||||||||||| || ||||| || ||||||||| | ||||||| || || || Sbjct 23393 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGAC 23452 Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 |||| | || | | |||| ||||| || || ||||| ||| |||||||| Sbjct 23453 TTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 23512 Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639 || | || || | || |||| |||| |||||||| | | ||| | | | | Sbjct 23513 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGT 23572 Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 ||| ||||| ||| ||||||||| | ||||| || || || || ||||| ||||| Sbjct 23573 ATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 23632 Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 | ||| || | | ||||||||||| || ||| Sbjct 23633 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 23666 >seq44697 Length=182102 Score = 183 bits (202), Expect = 4e-41 Identities = 569/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||| || || || || | || || || |||||||| || |||| ||| || Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| || ||||| | |||| || | || | | | ||||| || | | Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 |||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219 Query 36107 GATATTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGCG 36163 | ||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCA 113276 Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||||| | ||| ||||| ||| |||||| ||||| || || || | ||| ||| Sbjct 113277 AAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGC 113336 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCC 36282 |||| || |||||||| | ||| ||||| | | |||| | | || || || ||||| || Sbjct 113337 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCGGAGAAAAAAATACC 113395 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCCA 36339 ||| || ||||| |||| | | ||| || | ||| || ||| ||||| Sbjct 113396 TTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCA 113452 Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 | | ||||| | |||||||| | ||||| || || ||||| | || || | Sbjct 113453 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAA 113512 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 | ||||||| | | || || | || | || | | ||||| ||||| || || Sbjct 113513 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 113572 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 || ||||||||||| || ||||| || ||||||||| | ||||||| || || || Sbjct 113573 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGAC 113632 Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 |||| | || | | | |||| ||||| || || ||||| ||| |||||||| Sbjct 113633 TTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 113692 Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639 || | || || | || |||| |||| |||||||| | | ||| | | | | Sbjct 113693 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTT 113752 Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 ||| ||| | ||| |||||||| | ||||| || || || || ||||| ||||| Sbjct 113753 ATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 113812 Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 | ||| || | | ||||||||||| || ||| Sbjct 113813 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657735707443520