Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq32633 93.3 4e-14 seq48040 91.5 1e-13 seq51452 89.7 5e-13 seq19192 86.0 6e-12 seq3636 84.2 2e-11 >seq32633 Length=132462 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || || || || |||||| |||||| | |||||||| ||||| ||||||||||| Sbjct 60958 TCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTA 61017 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | || | ||| |||| ||| ||||||| ||| | Sbjct 61018 TCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAACCTCAAGGGTAATA 61077 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| |||||||| || || |||||| Sbjct 61078 GTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCATA 61113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||||||||| | || ||| || || ||||| |||||| Sbjct 60460 GTGGACTCTTTCTGGATGTTATAATCAGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCA 60519 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || | ||| ||||| || || || || ||||||||||| ||| ||| ||| Sbjct 60520 GCAAAAATTAAACGCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGGATCTTTGCTTTC 60579 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||| || | ||| || || | || | ||||| || |||||||| Sbjct 60580 ACATTATCAATTGTATCTGAACTCTCAACTTCCAGCGTGATTGTCTTCCCAGTCAACGTC 60639 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 60640 TTCACAAAGATCTGCATA 60657 >seq48040 Length=167738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || || ||||| |||||||| ||||| || || | | || Sbjct 54766 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 54707 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 54706 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 54647 >seq51452 Length=252770 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTC-ATTGTGCTCGAGTCT 139612 ||| | ||||| || ||||| |||||||| || ||||| || | | ||| | || Sbjct 59145 AACAAGGTGAAGTGTTGACTCCTTTTGAATATTGTAATCTGCGAGAGTATGCCCA--TCC 59202 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 ||||||||||| || || |||||| |||||| ||||| || || || ||||||||||| Sbjct 59203 TCGAGCTGTTTTCCTGCGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCC 59262 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 |||||| ||| | | || | ||||| | ||| || || | || || ||| Sbjct 59263 TGGATTTTGGCTTTAACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTC 59322 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| |||| || || || || || ||||| Sbjct 59323 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 59354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||| ||| | || ||||| |||||||||||||| || | || ||| ||||| Sbjct 58234 ACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCC 58293 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || || ||| | ||||| | ||||||||| || || |||||||| ||||| || Sbjct 58294 AATTGCTTTCCTGCAAATATCAGCCTTTGCTGATCCGGTGGGATGCCTTCCTTGTC-TTG 58352 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||||| ||| | | || | ||||| | | ||| || || | || | || || Sbjct 58353 AATTTTTGCCTTAACATTGTCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTT 58412 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || || || || |||||||| Sbjct 58413 CCCAGTTAAGGTCTTAACAAAGATTTGCAT 58442 >seq19192 Length=430667 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || | |||| || ||||| || || ||||||||||| | ||| || Sbjct 373415 AAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCAAGTGTCCTT 373474 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| || || || || ||| | ||||| || ||||| || || || || ||||| Sbjct 373475 CCATCTTCAAGTTGCTTCCCTGCAAATATCAGTCGCTGCTGGTCTGGGGGAATCCCTTCC 373534 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| |||| | || | | || | |||||| | ||| ||||| | ||| Sbjct 373535 TTGTC-TTGAATTTTGGCCTTCACATTATCAATTGTGTCCGAACTCTCAACCTCCAAGGT 373593 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || ||||| || || || || |||||||| Sbjct 373594 GATAGTTTTTCCTGTCAAAGTCTTGACAAAGATTTGCAT 373632 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| || || ||||| | |||| | || || ||||| |||||| Sbjct 373208 GTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACCA 373267 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | || || | |||||||| || || || ||||||||||| ||| |||| | || Sbjct 373268 GCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTGTC-CTGAATTTTGGCCTT 373326 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | |||||| || | || | ||||| || ||||| || Sbjct 373327 CACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTCCCTGTCAAAGT 373386 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| || ||||| |||||| || Sbjct 373387 TTTAACAAATATCTGCATACCT 373408 >seq3636 Length=134301 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | ||||| || || || ||||| ||||| || ||| Sbjct 15397 CCACCACGTAGACGGAGGACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCA 15338 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| |||||| | |||||||||||||| Sbjct 15337 AGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCGGGAGGG 15278 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | ||||||| ||| || Sbjct 15277 ATTCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 15219 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || ||||| | ||| ||||| || |||||||| Sbjct 15218 CTCGAGAGTAATGGTTTTTCCGGTGAGCGTCTTTACAAAGATTTGCAT 15171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495734563897600