Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq38302 194 2e-44
seq44697 185 1e-41
>seq38302
Length=59671
Score = 194 bits (214), Expect = 2e-44
Identities = 568/871 (65%), Gaps = 8/871 (1%)
Strand=Plus/Plus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
||||| || || || || | || || || |||||||| || |||| || ||
Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
||||| ||||||||||||| | |||| || | || ||| | ||||| || | |
Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
|||||||| || |||||||| || ||| | |||||| || | ||||||||| | ||
Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
| || || || || | ||| || ||| || || ||||||| | |||
Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039
Query 49909 GATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGCG 49965
|||| ||| ||| | | | ||| ||| || | | |||||| |||
Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAAC---TATAAAGCAAACAAGCG 23096
Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025
||||| ||||||| ||| ||||| || ||||| ||||| || || || | ||| |||
Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156
Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCC 50084
|||| || |||||||| | ||| ||||| | | |||| | ||||| || || || ||
Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCAGAGAAAAAAATACC 23215
Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTT 50144
||| || | ||| ||||| | | ||| || | | || | | |||||
Sbjct 23216 TTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCGATCCAACG 23275
Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204
| | ||||| | |||||||| | ||||| || || || || | || || |
Sbjct 23276 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAATCT 23335
Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264
| ||||||| | | || || | || | || | | ||||| ||||| || || ||
Sbjct 23336 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 23395
Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324
||||||||||| || || || || ||||||||| | ||||||| || || |||||
Sbjct 23396 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTTC 23455
Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384
| | || | | |||| ||||| || || ||||| ||| |||||||| ||
Sbjct 23456 TTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGC 23515
Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444
| || || | || ||||| |||| ||||||||| | | ||| | | | ||||
Sbjct 23516 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGTATC 23575
Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504
||||| ||| ||||||||| | ||||| || || || || ||||| ||||| |
Sbjct 23576 GGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 23635
Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATA 50535
||| || | | ||||| |||||||| |||
Sbjct 23636 CCAAATTTGTGGGTATTGAATTGGGAACATA 23666
>seq44697
Length=182102
Score = 185 bits (204), Expect = 1e-41
Identities = 567/871 (65%), Gaps = 8/871 (1%)
Strand=Plus/Plus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
||||| || || || || | || || || |||||||| || |||| || ||
Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
||||| ||||||||||||| | |||| || | || | | | ||||| || | |
Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
|||||||| || |||||||| || ||| | |||||| || | ||||||||| | ||
Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
| || || || || | ||| || ||| || || ||||||| | |||
Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219
Query 49909 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 49965
|||| ||| ||| | | | | | || ||| || | | |||||| ||
Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCA 113276
Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025
||||| ||||||| ||| ||||| ||| ||||| ||||| || || || | ||| |||
Sbjct 113277 AAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGC 113336
Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCC 50084
|||| || |||||||| | ||| ||||| | | |||| | || || || || || ||
Sbjct 113337 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCGGAGAAAAAAATACC 113395
Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTT 50144
||| || ||||| ||||| | | ||| || | | || | | |||||
Sbjct 113396 TTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCGATCCAACG 113455
Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204
| | ||||| | |||||||| | ||||| || || || || | || || |
Sbjct 113456 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCT 113515
Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264
| ||||||| | | || || | || | || | | ||||| ||||| || || ||
Sbjct 113516 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 113575
Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324
||||||||||| || || || || ||||||||| | ||||||| || || |||||
Sbjct 113576 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTTC 113635
Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384
| | || | | | |||| ||||| || || ||||| ||| |||||||| ||
Sbjct 113636 TTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGC 113695
Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444
| || || | || ||||| |||| ||||||||| | | ||| | | | ||||
Sbjct 113696 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTTATC 113755
Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504
||| | ||| |||||||| | ||||| || || || || ||||| ||||| |
Sbjct 113756 AGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 113815
Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATA 50535
||| || | | ||||| |||||||| |||
Sbjct 113816 CCAAATTTGTGGGTATTGAATTGGGAACATA 113846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717791797689920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |