Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq38302 194 2e-44 seq44697 185 1e-41 >seq38302 Length=59671 Score = 194 bits (214), Expect = 2e-44 Identities = 568/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| || || || || | || || || |||||||| || |||| || || Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | |||| || | || ||| | ||||| || | | Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039 Query 49909 GATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGCG 49965 |||| ||| ||| | | | ||| ||| || | | |||||| ||| Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAAC---TATAAAGCAAACAAGCG 23096 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 ||||| ||||||| ||| ||||| || ||||| ||||| || || || | ||| ||| Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCC 50084 |||| || |||||||| | ||| ||||| | | |||| | ||||| || || || || Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCAGAGAAAAAAATACC 23215 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTT 50144 ||| || | ||| ||||| | | ||| || | | || | | ||||| Sbjct 23216 TTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCGATCCAACG 23275 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 23276 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAATCT 23335 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 | ||||||| | | || || | || | || | | ||||| ||||| || || || Sbjct 23336 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 23395 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||||||||| || || || || ||||||||| | ||||||| || || ||||| Sbjct 23396 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTTC 23455 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 | | || | | |||| ||||| || || ||||| ||| |||||||| || Sbjct 23456 TTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGC 23515 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 | || || | || ||||| |||| ||||||||| | | ||| | | | |||| Sbjct 23516 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGTATC 23575 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 ||||| ||| ||||||||| | ||||| || || || || ||||| ||||| | Sbjct 23576 GGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 23635 Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||| || | | ||||| |||||||| ||| Sbjct 23636 CCAAATTTGTGGGTATTGAATTGGGAACATA 23666 >seq44697 Length=182102 Score = 185 bits (204), Expect = 1e-41 Identities = 567/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| || || || || | || || || |||||||| || |||| || || Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | |||| || | || | | | ||||| || | | Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219 Query 49909 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 49965 |||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCA 113276 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 ||||| ||||||| ||| ||||| ||| ||||| ||||| || || || | ||| ||| Sbjct 113277 AAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGC 113336 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCC 50084 |||| || |||||||| | ||| ||||| | | |||| | || || || || || || Sbjct 113337 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAAAAGCTTCCGGAGAAAAAAATACC 113395 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTT 50144 ||| || ||||| ||||| | | ||| || | | || | | ||||| Sbjct 113396 TTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCGATCCAACG 113455 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 113456 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCT 113515 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 | ||||||| | | || || | || | || | | ||||| ||||| || || || Sbjct 113516 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 113575 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||||||||| || || || || ||||||||| | ||||||| || || ||||| Sbjct 113576 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACTTC 113635 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 | | || | | | |||| ||||| || || ||||| ||| |||||||| || Sbjct 113636 TTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGC 113695 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATC 50444 | || || | || ||||| |||| ||||||||| | | ||| | | | |||| Sbjct 113696 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTTATC 113755 Query 50445 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 50504 ||| | ||| |||||||| | ||||| || || || || ||||| ||||| | Sbjct 113756 AGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 113815 Query 50505 CCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||| || | | ||||| |||||||| ||| Sbjct 113816 CCAAATTTGTGGGTATTGAATTGGGAACATA 113846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717791797689920