Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq51452 86.0 5e-12 seq20296 84.2 2e-11 >seq51452 Length=252770 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||||||| | | || ||| | || || | ||||| || ||||| Sbjct 4558 CTCCTTTTGAATATTGTAATCAGCGAGAGTCCGTCCATCCTCGAGCTGTTTTCCTGCAAA 4617 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| || |||||||| | ||| | |||||| || || ||| | || || | Sbjct 4618 GATCAAACGTTGTTGATCTGGCGGAATACCTTCCTTATCTTGGATTTTGGCCTTAACATT 4677 Query 43038 GCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 ||| ||||| | ||| | |||| || | || || ||||| || || | ||||| | Sbjct 4678 ATCAATCGTGTC-CGAGCTTTCGACTTCCAATGTGATTGTTTTCCCAGTCAAGGTTTTAA 4736 Query 43097 CAAAAATTTGCATT 43110 |||||||||||||| Sbjct 4737 CAAAAATTTGCATT 4750 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||| ||||| | || || || | || |||||||| || || ||||| Sbjct 58935 CTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAA 58994 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| || ||||| || | || | |||||| || || || | || || | Sbjct 58995 AATCAGTCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGTCTTAACATT 59054 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 ||| || || | ||| ||| || || | ||| || ||||||||||||| ||||| | Sbjct 59055 ATCAATAGTATC-CGAGCTCTCAACTTCCAACGTGATTGTTTTTCCGGTTAATGTTTTAA 59113 Query 43097 CAAAAATTTGCATT 43110 | |||||||||||| Sbjct 59114 CGAAAATTTGCATT 59127 >seq20296 Length=523354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| |||| ||||| || | |||||||| | Sbjct 452967 CCACCACGGAGACGAAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 452908 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||||| ||||| ||||| | ||||| || || | || Sbjct 452907 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 452848 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | ||||||| | ||||| Sbjct 452847 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACC 452788 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || || ||||| |||||||| || || ||||| ||| Sbjct 452787 TCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 452737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381122664137424