Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq32633 91.5 1e-13 seq19192 89.7 5e-13 seq48040 87.8 2e-12 seq51452 86.0 6e-12 seq33627 86.0 6e-12 seq50708 84.2 2e-11 seq37995 84.2 2e-11 seq3636 82.4 8e-11 >seq32633 Length=132462 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 143028 |||| || ||||| | || ||||| ||||| ||||||||||| ||| | ||| || Sbjct 60670 CGCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCAGCT-AGTGTCCTTCC 60728 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || |||||| | || || | ||||| || || || || ||||| || Sbjct 60729 ATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTT 60788 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||||| || | | || | ||||||| | || ||||||| ||| | Sbjct 60789 ATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAACTTCAAGAGTAAT 60848 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || ||||| ||||| || || ||||||||| Sbjct 60849 AGTTTTCCCAGTCAAGGTTTTCACAAAGATTTGCATA 60885 >seq19192 Length=430667 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 ||| ||||| ||||| || |||||||| | |||| | || || || || ||||| Sbjct 373207 TGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACC 373266 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| | || || | |||||||| || || || ||||||||||| |||||| || Sbjct 373267 AGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGAATTTTGGCCTT 373326 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||||| | | || ||||| | ||| | ||||| || ||||| || Sbjct 373327 CACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTCCCTGTCAAAGT 373386 Query 143167 TTTTACGAATATTTGCATAGCT 143188 ||| || ||||| |||||| || Sbjct 373387 TTTAACAAATATCTGCATACCT 373408 >seq48040 Length=167738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | |||| || |||||||| || ||||||||||| || || | | || Sbjct 54766 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 54707 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 54706 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 54647 Query 143092 --GGTAA 143096 ||||| Sbjct 54646 CTGGTAA 54640 >seq51452 Length=252770 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTC-ATTGTGCTCGAGTCTTCGAGTT 143039 |||| ||| || || ||||| || |||||||| || | | ||| | || ||||| | Sbjct 59152 TGAAGTGTTGACTCCTTTTGAATATTGTAATCTGCGAGAGTATGCCCA--TCCTCGAGCT 59209 Query 143040 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTT 143099 |||| || || |||||| |||||| ||||| || || || ||||||||||| |||| Sbjct 59210 GTTTTCCTGCGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTT 59269 Query 143100 TTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159 | ||| | | || | |||||| | || ||||| | ||| || |||||||| | Sbjct 59270 TGGCTTTAACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTCTTGCCAG 59329 Query 143160 TCAATGTTTTTACGAATATTTGCAT 143184 ||| || || || || || ||||| Sbjct 59330 TCAGGGTCTTCACAAAGATCTGCAT 59354 >seq33627 Length=115891 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/231 (68%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | ||| | ||| | || || ||||| || ||||||| ||| Sbjct 50427 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTGATCTGC 50368 Query 143017 CATTGTGCTCGAGTCTTCG--AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || ||| ||| ||| || ||||| || || ||| ||||||| | ||||| | ||| Sbjct 50367 CAATGTCCTCCCGTCCTCTTAAGTTGCTTCCCTGCAAAGATCAGTCTCTGCTGGCCTGGA 50308 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| ||| ||| ||||| | || | || || | ||| Sbjct 50307 GGAATACCTTCCTTGTCTTGAATCTTTGCTTTTACATTGTCGATAGTATCTGAACTTTCA 50248 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||| | | ||||||||||| | ||| || || || || |||||| Sbjct 50247 ACTTCAAGGATGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATA 50197 >seq50708 Length=321788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | ||| | || ||||| || || ||||| ||||| Sbjct 282128 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGCA 282187 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | | || ||||||||||| |||||| | |||| | ||| ||||| ||||| Sbjct 282188 AGTGTTCGCCCATCCTCGAGTTGTTTTCCAGCAAAAATCAACCTTTGTTGATCCGGAGGA 282247 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTA 143108 || ||||| ||||| | | | ||||||||| Sbjct 282248 ATTCCTTCCTTGTC-TTGAATCTTTGTTTTA 282277 >seq37995 Length=189229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| | |||| ||| |||||||| || || |||||||| | Sbjct 163966 CCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 163907 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| | ||||| |||||| | ||||| | ||||| || |||| Sbjct 163906 AGAGT--TCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAG 163849 Query 143076 GTATGCCTTCTTTGTC--GGTAA 143096 |||| ||||||||||| ||||| Sbjct 163848 GTATCCCTTCTTTGTCCTGGTAA 163826 >seq3636 Length=134301 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| || | |||| | ||||| || || Sbjct 15601 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGCCCATCTTCAAGCTGC 15542 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| |||||| | |||||||| ||||| |||||||| ||||| || || Sbjct 15541 TTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 15482 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||| | | || || |||| || | ||||| |||||| Sbjct 15481 GCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCGGTC 15422 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 ||||||||||| || || ||||| Sbjct 15421 AATGTTTTTACAAAAATCTGCAT 15399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506677691736960