Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq32633 91.5 1e-13
seq19192 89.7 5e-13
seq48040 87.8 2e-12
seq51452 86.0 6e-12
seq33627 86.0 6e-12
seq50708 84.2 2e-11
seq37995 84.2 2e-11
seq3636 82.4 8e-11
>seq32633
Length=132462
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 143028
|||| || ||||| | || ||||| ||||| ||||||||||| ||| | ||| ||
Sbjct 60670 CGCAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCAGCT-AGTGTCCTTCC 60728
Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088
|| || || || || |||||| | || || | ||||| || || || || ||||| ||
Sbjct 60729 ATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTT 60788
Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148
|| ||||||| || | | || | ||||||| | || ||||||| ||| |
Sbjct 60789 ATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAACTTCAAGAGTAAT 60848
Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| || || ||||| ||||| || || |||||||||
Sbjct 60849 AGTTTTCCCAGTCAAGGTTTTCACAAAGATTTGCATA 60885
>seq19192
Length=430667
Score = 89.7 bits (98), Expect = 5e-13
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046
||| ||||| ||||| || |||||||| | |||| | || || || || |||||
Sbjct 373207 TGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACC 373266
Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106
|||| | || || | |||||||| || || || ||||||||||| |||||| ||
Sbjct 373267 AGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGAATTTTGGCCTT 373326
Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166
| | || | ||||| | | || ||||| | ||| | ||||| || ||||| ||
Sbjct 373327 CACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTCCCTGTCAAAGT 373386
Query 143167 TTTTACGAATATTTGCATAGCT 143188
||| || ||||| |||||| ||
Sbjct 373387 TTTAACAAATATCTGCATACCT 373408
>seq48040
Length=167738
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031
|||||| | |||| || |||||||| || ||||||||||| || || | | ||
Sbjct 54766 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 54707
Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| ||
Sbjct 54706 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 54647
Query 143092 --GGTAA 143096
|||||
Sbjct 54646 CTGGTAA 54640
>seq51452
Length=252770
Score = 86.0 bits (94), Expect = 6e-12
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTC-ATTGTGCTCGAGTCTTCGAGTT 143039
|||| ||| || || ||||| || |||||||| || | | ||| | || ||||| |
Sbjct 59152 TGAAGTGTTGACTCCTTTTGAATATTGTAATCTGCGAGAGTATGCCCA--TCCTCGAGCT 59209
Query 143040 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTT 143099
|||| || || |||||| |||||| ||||| || || || ||||||||||| ||||
Sbjct 59210 GTTTTCCTGCGAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTT 59269
Query 143100 TTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159
| ||| | | || | |||||| | || ||||| | ||| || |||||||| |
Sbjct 59270 TGGCTTTAACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTACGGTCTTGCCAG 59329
Query 143160 TCAATGTTTTTACGAATATTTGCAT 143184
||| || || || || || |||||
Sbjct 59330 TCAGGGTCTTCACAAAGATCTGCAT 59354
>seq33627
Length=115891
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/231 (68%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| |||| | ||| | ||| | ||| | || || ||||| || ||||||| |||
Sbjct 50427 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTGATCTGC 50368
Query 143017 CATTGTGCTCGAGTCTTCG--AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074
|| ||| ||| ||| || ||||| || || ||| ||||||| | ||||| | |||
Sbjct 50367 CAATGTCCTCCCGTCCTCTTAAGTTGCTTCCCTGCAAAGATCAGTCTCTGCTGGCCTGGA 50308
Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134
|| || ||||| ||||| ||| ||| ||||| | || | || || | |||
Sbjct 50307 GGAATACCTTCCTTGTCTTGAATCTTTGCTTTTACATTGTCGATAGTATCTGAACTTTCA 50248
Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||||||| | | ||||||||||| | ||| || || || || ||||||
Sbjct 50247 ACTTCAAGGATGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATA 50197
>seq50708
Length=321788
Score = 84.2 bits (92), Expect = 2e-11
Identities = 110/151 (73%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | |||||| || | ||| | || ||||| || || ||||| |||||
Sbjct 282128 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGAATGTTATAATCAGCA 282187
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | | || ||||||||||| |||||| | |||| | ||| ||||| |||||
Sbjct 282188 AGTGTTCGCCCATCCTCGAGTTGTTTTCCAGCAAAAATCAACCTTTGTTGATCCGGAGGA 282247
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTA 143108
|| ||||| ||||| | | | |||||||||
Sbjct 282248 ATTCCTTCCTTGTC-TTGAATCTTTGTTTTA 282277
>seq37995
Length=189229
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/143 (74%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| | | |||||| | |||| ||| |||||||| || || |||||||| |
Sbjct 163966 CCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 163907
Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| || |||| ||||| | ||||| |||||| | ||||| | ||||| || ||||
Sbjct 163906 AGAGT--TCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAG 163849
Query 143076 GTATGCCTTCTTTGTC--GGTAA 143096
|||| ||||||||||| |||||
Sbjct 163848 GTATCCCTTCTTTGTCCTGGTAA 163826
>seq3636
Length=134301
Score = 82.4 bits (90), Expect = 8e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041
|||| || || || || || |||||||| || | |||| | ||||| || ||
Sbjct 15601 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGCCCATCTTCAAGCTGC 15542
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
|| |||||| |||||| | |||||||| ||||| |||||||| ||||| || ||
Sbjct 15541 TTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 15482
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
|| | | || | ||||| | | || || |||| || | ||||| ||||||
Sbjct 15481 GCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCGGTC 15422
Query 143162 AATGTTTTTACGAATATTTGCAT 143184
||||||||||| || || |||||
Sbjct 15421 AATGTTTTTACAAAAATCTGCAT 15399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506677691736960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |