Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq50758 98.7 8e-16 seq51452 93.3 3e-14 seq19192 91.5 1e-13 >seq50758 Length=122349 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| |||||||| ||||| |||| || | | || |||| || Sbjct 118923 GTGCAGGGTGGACTCCTTCTGAATATTATAATCAGCCAGAGTCCTTCCATCTTCCAATTG 118864 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || |||||| | || || |||||||||||| ||| | ||||| ||||| ||| || Sbjct 118863 CTTCCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTT 118804 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | | |||||| | ||| || | || |||||||| || || Sbjct 118803 AGCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGT 118744 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| |||||||| ||||| Sbjct 118743 CAACGTTTTCACAAAAATCTGCAT 118720 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| ||||| |||||||| || | || | | || || Sbjct 118245 CACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGCTAGGGTACGGCCATCTTC 118186 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||| || ||| | || | ||||||||||| || | |||||||| || Sbjct 118185 CAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCTTTATCCTG 118126 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTT 19010 ||| ||| || || | | | | || ||| || | || ||| | ||| || |||| Sbjct 118125 AATCTTCGCCTTAACGTTGTCAATTGTGTCG-GAGCTTTCGACTTCAAGGGTGATTGTTT 118067 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || |||| ||||||||||| |||||||| Sbjct 118066 TCCCGGTTAGGGTTTTGACAAAGATTTGCAT 118036 >seq51452 Length=252770 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| || | |||||| | ||| | || | ||||||||||| || |||||||| ||||| Sbjct 57987 TCCACCCCTCAACCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCCGC 58046 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 || ||| | | ||||||| |||||| || ||| | || || |||||||| ||| || Sbjct 58047 CAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGG 58106 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || ||||| || || ||| || || | | | | || || ||| Sbjct 58107 AATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAAC 58166 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 58167 TTCCAATGTGATGGTCTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 58215 >seq19192 Length=430667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||| ||||||||||| || | || | ||||| Sbjct 373195 CACAAGGTGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTC 373254 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | || || ||||||||||| || | || |||||||| Sbjct 373255 CAGCTGCTTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTG 373314 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||| || |||| ||| | || ||||| || Sbjct 373315 AATTTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTT 373374 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| |||||||| ||||| || ||||| Sbjct 373375 CCCTGTCAAAGTTTTAACAAATATCTGCAT 373404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414304365148432