Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq51452 116 3e-21 seq32633 107 1e-18 seq19192 96.9 2e-15 >seq51452 Length=252770 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAA 43988 ||| ||||||||||||||||| | | || ||| |||| |||||||| || || |||| Sbjct 58935 CTCCTTTTGAATATTATAATCTGCCAGAGTG-CGCCCATCTTCCAATTGCTTCCCAGCAA 58993 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | |||| | ||| |||||| | || | |||||| |||||| |||||| || || Sbjct 58994 AAATCAGTCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGTCTTAACAT 59053 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || ||| |||||| | ||| || || | ||| |||||||| |||||||| || || | Sbjct 59054 TATCAATAGTATCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCGGTTAATGTTTTAA 59113 Query 44109 CAAATATTTGCAT 44121 | || |||||||| Sbjct 59114 CGAAAATTTGCAT 59126 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| |||||||||||||||| || |||||| ||| | || | ||||| | Sbjct 58286 CATCTTCCAATTGCTTTCCTGCAAATATCAGCCTTTGCTGATCCGGTGGGATGCCTTCCT 58345 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| ||||||| || || | ||| || || | ||| || || | || | Sbjct 58346 TGTCTTGAATTTTTGCCTTAACATTGTCAATCGTGTCCGAGCTCTCAACTTCCAATGTGA 58405 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || ||||| ||||| ||||| |||||||| Sbjct 58406 TTGTTTTCCCAGTTAAGGTCTTAACAAAGATTTGCAT 58442 >seq32633 Length=132462 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| ||||| | | ||||||||| || ||| |||||| || || |||||||| Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 60489 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | || || || ||||| || || || ||||||||| | || Sbjct 60490 AGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGGA 60549 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||| ||| || ||| ||| || || ||| ||||||| ||| || Sbjct 60550 ATACCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCAATTGTATCTGAACTCTCAACT 60609 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||| ||||| || || || || ||||||||||| || ||||| Sbjct 60610 TCCAGCGTGATTGTCTTCCCAGTCAACGTCTTCACAAAGATCTGCAT 60656 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || |||| || | ||||| ||| || ||| || || |||||||| || || Sbjct 60885 ACCACCCCTCAGCCTCAGCACCAGATGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 60944 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | ||| ||||| ||||| ||||||| ||||| || |||| Sbjct 60945 AAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGG 61004 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||| |||||| | ||| ||||| | ||| || Sbjct 61005 AATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAAC 61064 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || ||||| || ||||| || ||||| Sbjct 61065 CTCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 61112 >seq19192 Length=430667 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | ||||||| ||| || || ||| || || || |||||||| Sbjct 373405 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGC 373464 Query 43954 TAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | || ||| || | ||| || ||||||||||||| || |||||||| | | Sbjct 373465 -AAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAGTCGCTGCTGGTCTGGGG 373523 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| || ||| |||||| || || || ||| || || | ||| | Sbjct 373524 GAATCCCTTCCTTGTCTTGAATTTTGGCCTTCACATTATCAATTGTGTCCGAACTCTCAA 373583 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || | || || ||||| || || |||||||| ||||| ||||||||| Sbjct 373584 CCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACAAAGATTTGCATG 373633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354547882390944