Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq50758 109 5e-19 seq37995 102 7e-17 seq32633 82.4 6e-11 >seq50758 Length=122349 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || || || || || ||||| ||| ||| | |||||||||||| Sbjct 118922 TGCAGGGTGGACTCCTTCTGAATATTATAATCAGCCAGAGTCCTTCCATCTTCCAATTGC 118863 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || |||||| | || |||||||| ||||| ||| | || || ||||| ||| || Sbjct 118862 TTCCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA 118803 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | | ||| || ||| | |||| |||| || |||||||| |||||| Sbjct 118802 GCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGTC 118743 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 |||||||| |||||||| ||||| Sbjct 118742 AACGTTTTCACAAAAATCTGCAT 118720 >seq37995 Length=189229 Score = 102 bits (112), Expect = 7e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||||| | |||||| |||| || ||||| |||||||| || || Sbjct 163978 TTAATCATAGTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATA 163919 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| |||| |||||||| Sbjct 163918 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGC 163859 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 163858 TGGTCAGGAGGTATCCCTTCTTTGTC 163833 >seq32633 Length=132462 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||||||| || || ||||| ||||| ||||||||||| | | || | ||| Sbjct 60672 CAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCAGCTAGTGTCCTTCCATC 60731 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || | || || || ||| ||||||||||||| || || || | ||||| || || Sbjct 60732 CTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTTATC 60791 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 ||||||| || || | | | | | || | || | || ||| | ||||| | Sbjct 60792 TTGAATTTTTGCCTTAACATTGTCGATGGTGTC-CGAGCTCTCAACTTCAAGAGTAATAG 60850 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| ||||| ||||| |||||||| Sbjct 60851 TTTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 60884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419315518336968