Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq50758 109 5e-19
seq37995 102 7e-17
seq32633 82.4 6e-11
>seq50758
Length=122349
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || || || || || || || ||||| ||| ||| | ||||||||||||
Sbjct 118922 TGCAGGGTGGACTCCTTCTGAATATTATAATCAGCCAGAGTCCTTCCATCTTCCAATTGC 118863
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| |||||| | || |||||||| ||||| ||| | || || ||||| ||| ||
Sbjct 118862 TTCCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA 118803
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|||||| | | ||| || ||| | |||| |||| || |||||||| ||||||
Sbjct 118802 GCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGTC 118743
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
|||||||| |||||||| |||||
Sbjct 118742 AACGTTTTCACAAAAATCTGCAT 118720
>seq37995
Length=189229
Score = 102 bits (112), Expect = 7e-17
Identities = 111/146 (76%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029
|| ||||| ||||||||| | |||||| |||| || ||||| |||||||| || ||
Sbjct 163978 TTAATCATAGTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATA 163919
Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089
|||||||| ||| |||| | ||||||||| ||||| || ||| |||| ||||||||
Sbjct 163918 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGC 163859
Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115
|| || || | |||||||||||
Sbjct 163858 TGGTCAGGAGGTATCCCTTCTTTGTC 163833
>seq32633
Length=132462
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
|| ||||||||| || || ||||| ||||| ||||||||||| | | || | |||
Sbjct 60672 CAGCACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCAGCTAGTGTCCTTCCATC 60731
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115
|| | || || || ||| ||||||||||||| || || || | ||||| || ||
Sbjct 60732 CTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTTATC 60791
Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174
||||||| || || | | | | | || | || | || ||| | ||||| |
Sbjct 60792 TTGAATTTTTGCCTTAACATTGTCGATGGTGTC-CGAGCTCTCAACTTCAAGAGTAATAG 60850
Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|||| || ||||| ||||| ||||| ||||||||
Sbjct 60851 TTTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 60884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419315518336968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |