Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 145 7e-30
seq38302 127 2e-24
>seq44697
Length=182102
Score = 145 bits (160), Expect = 7e-30
Identities = 483/746 (65%), Gaps = 9/746 (1%)
Strand=Plus/Plus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||||||||| |||||||| || | |||||| || ||||| || || || || |||
Sbjct 112965 GACATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 113024
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964
| ||| ||| ||||| |||| || ||||| | | | || | || | | |
Sbjct 113025 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAA 113084
Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024
|| || | |||||||| ||||| ||||| || ||||| | |||| ||||| |
Sbjct 113085 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 113144
Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084
|||||||| | | ||||| || || | ||| | ||||||| || ||
Sbjct 113145 TTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACA 113204
Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA---TAGATGCTTA 13141
|| || ||| || || |||| ||||| || | | | | || | || ||
Sbjct 113205 GCATCTGCAACAAT-TCCCTTAACTCGTTC-CTCA-GTAAGCTTCGTCCTTAACAAACTA 113261
Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201
| | || ||| ||||||||||||||||| ||||| || ||| |||| |||||| ||
Sbjct 113262 TAAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAG 113321
Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261
|| |||| || ||||| | ||| || ||||| | ||| ||||||||| ||| ||
Sbjct 113322 AAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCG 113381
Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321
|| ||||| || ||||| || ||||| || | ||| | || || | | | |
Sbjct 113382 GAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATG---TTTCG 113438
Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381
|| || ||||| | |||||| || || || | | ||| ||| ||| | ||
Sbjct 113439 GAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCA 113498
Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441
| |||| ||||| ||||||| | | ||| || || | |||| | |
Sbjct 113499 ACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGA 113558
Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501
|| ||||| || || || || ||||| ||||| |||||||| || || ||| | |||
Sbjct 113559 CTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCC 113618
Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561
|| | || || ||||| || ||| | |||| |||||| ||| || |||||
Sbjct 113619 TCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCT 113678
Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTG 13587
|| |||||||| ||||| | |||
Sbjct 113679 GAGGCGGCAAAAAAGGCAAGGACGTG 113704
>seq38302
Length=59671
Score = 127 bits (140), Expect = 2e-24
Identities = 480/747 (64%), Gaps = 11/747 (1%)
Strand=Plus/Plus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||||||||| |||||||| || | |||||| || ||||| || || || || |||
Sbjct 22785 GACATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 22844
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964
| ||| ||| ||||| |||| || ||||| | | | || | || ||| |
Sbjct 22845 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAA 22904
Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024
|| || | |||||||| ||||| ||||| || ||||| | |||| ||||| |
Sbjct 22905 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 22964
Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084
|||||||| | | ||||| || || | ||| | ||||||| || ||
Sbjct 22965 TTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACA 23024
Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTT 13140
|| || ||| || | |||| ||||| || | | | | || | | | ||
Sbjct 23025 GCATCTGCAACAATCCC-CTTAACTCGTTC-CTCA-GTAAGCTTCGTCCTCAACAAACTA 23081
Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200
|| | || ||| || |||||||||||||| ||||| || || |||| |||||| ||
Sbjct 23082 TAA-AGCAAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGA 23140
Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260
|| |||| || ||||| | ||| || ||||| | ||| ||||||||| ||| ||
Sbjct 23141 GAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCC 23200
Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320
|| ||||| || ||||| || | ||| || | ||| | || || | | | |
Sbjct 23201 AGAGAAAAAAATACCTTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATG---TTTC 23257
Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380
|| || ||||| | |||||| || || || | | ||| ||| ||| | ||
Sbjct 23258 GGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTC 23317
Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440
| |||| ||||| ||||||| | | ||| || || | |||| | |
Sbjct 23318 AACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAG 23377
Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500
|| ||||| || || || || ||||| ||||| |||||||| || || ||| | ||
Sbjct 23378 ACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGC 23437
Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560
||| | || || ||||| || || | |||| |||||| ||| || |||||
Sbjct 23438 CTCGGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTC 23497
Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTG 13587
|| |||||||| ||||| | |||
Sbjct 23498 TGAGGCGGCAAAAAAGGCAAGGACGTG 23524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430703339973456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |