Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq44697 145 7e-30 seq38302 127 2e-24 >seq44697 Length=182102 Score = 145 bits (160), Expect = 7e-30 Identities = 483/746 (65%), Gaps = 9/746 (1%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| |||||||| || | |||||| || ||||| || || || || ||| Sbjct 112965 GACATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 113024 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | ||| ||| ||||| |||| || ||||| | | | || | || | | | Sbjct 113025 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAA 113084 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || || | |||||||| ||||| ||||| || ||||| | |||| ||||| | Sbjct 113085 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 113144 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 |||||||| | | ||||| || || | ||| | ||||||| || || Sbjct 113145 TTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACA 113204 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA---TAGATGCTTA 13141 || || ||| || || |||| ||||| || | | | | || | || || Sbjct 113205 GCATCTGCAACAAT-TCCCTTAACTCGTTC-CTCA-GTAAGCTTCGTCCTTAACAAACTA 113261 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 | | || ||| ||||||||||||||||| ||||| || ||| |||| |||||| || Sbjct 113262 TAAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAG 113321 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || |||| || ||||| | ||| || ||||| | ||| ||||||||| ||| || Sbjct 113322 AAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCG 113381 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || ||||| || ||||| || ||||| || | ||| | || || | | | | Sbjct 113382 GAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATG---TTTCG 113438 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 || || ||||| | |||||| || || || | | ||| ||| ||| | || Sbjct 113439 GAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCA 113498 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 | |||| ||||| ||||||| | | ||| || || | |||| | | Sbjct 113499 ACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGA 113558 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 || ||||| || || || || ||||| ||||| |||||||| || || ||| | ||| Sbjct 113559 CTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCC 113618 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | || || ||||| || ||| | |||| |||||| ||| || ||||| Sbjct 113619 TCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCT 113678 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTG 13587 || |||||||| ||||| | ||| Sbjct 113679 GAGGCGGCAAAAAAGGCAAGGACGTG 113704 >seq38302 Length=59671 Score = 127 bits (140), Expect = 2e-24 Identities = 480/747 (64%), Gaps = 11/747 (1%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| |||||||| || | |||||| || ||||| || || || || ||| Sbjct 22785 GACATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 22844 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | ||| ||| ||||| |||| || ||||| | | | || | || ||| | Sbjct 22845 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAA 22904 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || || | |||||||| ||||| ||||| || ||||| | |||| ||||| | Sbjct 22905 CCCAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCA 22964 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 |||||||| | | ||||| || || | ||| | ||||||| || || Sbjct 22965 TTCATTCCCACCAGCGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACA 23024 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTT 13140 || || ||| || | |||| ||||| || | | | | || | | | || Sbjct 23025 GCATCTGCAACAATCCC-CTTAACTCGTTC-CTCA-GTAAGCTTCGTCCTCAACAAACTA 23081 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 || | || ||| || |||||||||||||| ||||| || || |||| |||||| || Sbjct 23082 TAA-AGCAAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGA 23140 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 || |||| || ||||| | ||| || ||||| | ||| ||||||||| ||| || Sbjct 23141 GAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCC 23200 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 || ||||| || ||||| || | ||| || | ||| | || || | | | | Sbjct 23201 AGAGAAAAAAATACCTTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATG---TTTC 23257 Query 13321 TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 || || ||||| | |||||| || || || | | ||| ||| ||| | || Sbjct 23258 GGAACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTC 23317 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 | |||| ||||| ||||||| | | ||| || || | |||| | | Sbjct 23318 AACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAG 23377 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 || ||||| || || || || ||||| ||||| |||||||| || || ||| | || Sbjct 23378 ACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGC 23437 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 ||| | || || ||||| || || | |||| |||||| ||| || ||||| Sbjct 23438 CTCGGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTC 23497 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTG 13587 || |||||||| ||||| | ||| Sbjct 23498 TGAGGCGGCAAAAAAGGCAAGGACGTG 23524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430703339973456