Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq20296 95.1 1e-14
seq17618 95.1 1e-14
seq3114 93.3 4e-14
seq49251 89.7 4e-13
seq7668 87.8 2e-12
seq32633 84.2 2e-11
seq3636 84.2 2e-11
seq33627 82.4 6e-11
>seq20296
Length=523354
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| ||||| || ||| ||||| || |||||||||||||| | ||| | |||||
Sbjct 452950 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 452891
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||| || ||| || |||| | |||||||| ||| || | | ||||||||||
Sbjct 452890 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 452831
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||| | | | || || || |||| || || ||| | || |||||
Sbjct 452830 GATCTTTGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 452773
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || || |||||||| || |||||||||
Sbjct 452772 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 452740
>seq17618
Length=194525
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| | |||||| || |||||| || ||||||||||| || | ||| |||| ||
Sbjct 71835 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 71894
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| ||| || |||| | |||||||||||| || | | |||||||||
Sbjct 71895 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTG 71954
Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
|| || |||| || | || || || |||| ||| || ||| | || || ||
Sbjct 71955 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 72011
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|||||| || || |||||||| || |||||||||
Sbjct 72012 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 72045
>seq3114
Length=370656
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| |||||| || || ||||| ||||| | | ||| | ||||| ||||||
Sbjct 9881 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTGC 9940
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
||||| || |||| || |||||||| || || | | |||||||||| ||| ||
Sbjct 9941 TTACCTGCGAAAATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGAATCTTA 10000
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | ||||| || | ||||| ||| | || || || || || ||
Sbjct 10001 GCCTTGACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCCGTC 10060
Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727
|| || ||||| || |||||||||
Sbjct 10061 AGGGTCTTCACGAATATCTGCATC 10084
>seq49251
Length=53185
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/214 (70%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| | |||||| || ||||| || ||||||||||| || | ||| |||| ||
Sbjct 47169 CACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 47228
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| |||||| |||| | |||||||||||| || | | |||||||||
Sbjct 47229 AAGCTGCTTTCCGCCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTG 47288
Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
|| || |||| || | || || || |||| ||| || ||| | || || ||
Sbjct 47289 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 47345
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|||||| | || |||||||| || |||||||||
Sbjct 47346 TTTACCCGCTAGGGTTTTCACGAAGATCTGCATC 47379
>seq7668
Length=316181
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| | |||||| || |||||| || ||||||||||| || | ||| |||| |
Sbjct 198728 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTT 198669
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| ||| || |||| | |||||||||||| || | | |||||||||
Sbjct 198668 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTG 198609
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || || | | | || || |||| ||| || ||| | || || |||||
Sbjct 198608 GATCTTGGATTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTT 198549
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||| || || |||||||| || |||||||||
Sbjct 198548 ACCCGTTAGGGTTTTCACGAAGATCTGCATC 198518
>seq32633
Length=132462
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| | ||||| | ||| ||||| || ||| ||| || || ||||| ||||||||
Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGC- 60488
Query 48560 AATTGTCG-CTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| ||| | | ||||| ||||||||||| | |||||||||||||||| ||| ||
Sbjct 60489 AAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGG 60548
Query 48619 CACACTTTCCTTGTC 48633
| || ||| |||||
Sbjct 60549 AATACCTTCTTTGTC 60563
>seq3636
Length=134301
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
||||| ||| |||||| || |||||||| ||||| | | || ||| | || || |||||
Sbjct 15601 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTG-CGCCCATCTTCAAGCTG 15543
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || | | || || | ||||||||| || | | |||||||||| || ||
Sbjct 15542 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 15483
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
| ||| | | | ||||| |||| ||| ||| | || ||||| || |||||
Sbjct 15482 CGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCGGT 15423
Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727
| ||||| |||||||||||||||
Sbjct 15422 CAATGTTTTTACAAAAATCTGCATC 15398
>seq33627
Length=115891
Score = 82.4 bits (90), Expect = 6e-11
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| | ||| | || || ||||| || || |||||| || ||||| || || ||
Sbjct 50654 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGCCTCCTTCTGGATGTTATAGTCCGC- 50596
Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|| ||| || |||||||||| || ||||| | | || ||||||||||| || ||
Sbjct 50595 AAGAGTC-CTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCG 50537
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676
| | || |||||||| ||| || ||| |||| | | |||||||| | | |||
Sbjct 50536 GGATACCCTCCTTGTCTTGAATCTT-TGCTTTGACATTGTCAATGGTATCAGAACTCTCA 50478
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||||| || || || || | ||| || |||||||| |||||
Sbjct 50477 ACCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATATGCAT 50428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420978440901128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |