Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq20296 95.1 1e-14 seq17618 95.1 1e-14 seq3114 93.3 4e-14 seq49251 89.7 4e-13 seq7668 87.8 2e-12 seq32633 84.2 2e-11 seq3636 84.2 2e-11 seq33627 82.4 6e-11 >seq20296 Length=523354 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| ||||| || |||||||||||||| | ||| | ||||| Sbjct 452950 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 452891 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || ||| || |||| | |||||||| ||| || | | |||||||||| Sbjct 452890 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 452831 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || || |||| || || ||| | || ||||| Sbjct 452830 GATCTTTGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 452773 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || |||||||| || ||||||||| Sbjct 452772 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 452740 >seq17618 Length=194525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || ||||||||||| || | ||| |||| || Sbjct 71835 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 71894 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | |||||||||||| || | | ||||||||| Sbjct 71895 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTG 71954 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| ||| || ||| | || || || Sbjct 71955 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 72011 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || || |||||||| || ||||||||| Sbjct 72012 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 72045 >seq3114 Length=370656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || || ||||| ||||| | | ||| | ||||| |||||| Sbjct 9881 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTGC 9940 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || |||| || |||||||| || || | | |||||||||| ||| || Sbjct 9941 TTACCTGCGAAAATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGAATCTTA 10000 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||| ||| | || || || || || || Sbjct 10001 GCCTTGACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCCGTC 10060 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| || ||||||||| Sbjct 10061 AGGGTCTTCACGAATATCTGCATC 10084 >seq49251 Length=53185 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || ||||| || ||||||||||| || | ||| |||| || Sbjct 47169 CACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 47228 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| |||||| |||| | |||||||||||| || | | ||||||||| Sbjct 47229 AAGCTGCTTTCCGCCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTG 47288 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| ||| || ||| | || || || Sbjct 47289 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 47345 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||| | || |||||||| || ||||||||| Sbjct 47346 TTTACCCGCTAGGGTTTTCACGAAGATCTGCATC 47379 >seq7668 Length=316181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || ||||||||||| || | ||| |||| | Sbjct 198728 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTT 198669 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | |||||||||||| || | | ||||||||| Sbjct 198668 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTG 198609 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || || | | | || || |||| ||| || ||| | || || ||||| Sbjct 198608 GATCTTGGATTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTT 198549 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || |||||||| || ||||||||| Sbjct 198548 ACCCGTTAGGGTTTTCACGAAGATCTGCATC 198518 >seq32633 Length=132462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||||| | ||| ||||| || ||| ||| || || ||||| |||||||| Sbjct 60430 CCTCCCCTCAACCGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTATAATCAGC- 60488 Query 48560 AATTGTCG-CTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| | | ||||| ||||||||||| | |||||||||||||||| ||| || Sbjct 60489 AAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATTAAACGCTGCTGGTCCGGGGG 60548 Query 48619 CACACTTTCCTTGTC 48633 | || ||| ||||| Sbjct 60549 AATACCTTCTTTGTC 60563 >seq3636 Length=134301 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| ||||| | | || ||| | || || ||||| Sbjct 15601 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTG-CGCCCATCTTCAAGCTG 15543 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | ||||||||| || | | |||||||||| || || Sbjct 15542 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 15483 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | ||||| |||| ||| ||| | || ||||| || ||||| Sbjct 15482 CGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCGGT 15423 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | ||||| ||||||||||||||| Sbjct 15422 CAATGTTTTTACAAAAATCTGCATC 15398 >seq33627 Length=115891 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | || || ||||| || || |||||| || ||||| || || || Sbjct 50654 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGCCTCCTTCTGGATGTTATAGTCCGC- 50596 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||||||||| || ||||| | | || ||||||||||| || || Sbjct 50595 AAGAGTC-CTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCG 50537 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676 | | || |||||||| ||| || ||| |||| | | |||||||| | | ||| Sbjct 50536 GGATACCCTCCTTGTCTTGAATCTT-TGCTTTGACATTGTCAATGGTATCAGAACTCTCA 50478 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || | ||| || |||||||| ||||| Sbjct 50477 ACCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATATGCAT 50428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420978440901128