Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq48408 118 6e-22 seq8501 113 2e-20 seq1914 113 2e-20 seq53032 111 8e-20 seq51908 111 8e-20 seq50731 111 8e-20 seq13991 111 8e-20 seq48721 109 3e-19 seq46137 109 3e-19 seq35141 109 3e-19 seq34898 109 3e-19 seq26077 109 3e-19 seq45015 107 1e-18 seq21975 107 1e-18 seq39375 105 3e-18 seq36339 104 1e-17 seq49467 84.2 1e-11 >seq48408 Length=241724 Score = 118 bits (130), Expect = 6e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 63677 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 63618 Query 11513 AACTGAGCTAATGGGCCGT 11531 ||||||||||||||||||| Sbjct 63617 AACTGAGCTAATGGGCCGT 63599 >seq8501 Length=261319 Score = 113 bits (124), Expect = 2e-20 Identities = 81/92 (88%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11440 TAATAAAAA--ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || |||||| || |||| |||||||| | | |||||||| |||||||||||||||||| Sbjct 42423 TATTAAAAAGTATTAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 42481 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 42482 CACGACGCTCTAACCAACTGAGCTAATGGGCC 42513 >seq1914 Length=304848 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 11443 TAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 241347 TAAAAAATGAAAGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 241406 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 241407 CGACGCTCTAACCAACTGAGCTAATGGGCC 241436 >seq53032 Length=64603 Score = 111 bits (122), Expect = 8e-20 Identities = 82/96 (85%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| ||||| ||| |||||||||| | | |||||||| |||||||||||||| Sbjct 56333 ATTAAGAAAAATGGAAAATACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 56274 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 56273 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 56238 >seq51908 Length=309089 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 233729 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 233788 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 233789 CAACTGAGCTAATGGGCC 233806 >seq50731 Length=48485 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 44122 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 44063 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 44062 CTGAGCTAATGGGCC 44048 >seq13991 Length=249863 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 169354 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 169413 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 169414 CTGAGCTAATGGGCC 169428 >seq48721 Length=198248 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 124110 AATTGGCCCATGCAGGTGTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 124169 Query 11513 AACTGAGCTAATGGGCC 11529 |||| |||||||||||| Sbjct 124170 AACTAAGCTAATGGGCC 124186 >seq46137 Length=140959 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 59424 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 59365 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 59364 TGAGCTAATGGGCC 59351 >seq35141 Length=93139 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 27039 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 27098 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 27099 TGAGCTAATGGGCC 27112 >seq34898 Length=67572 Score = 109 bits (120), Expect = 3e-19 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||||| ||| |||| || |||||||| | | |||||||| |||||||||||||||| Sbjct 66606 AATTAAAAAAGTATCATGTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 66547 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||| ||| Sbjct 66546 AGCACGACGCTCTAACCAACTGAGCTAATGAGCC 66513 >seq26077 Length=252038 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 48158 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 48099 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 48098 TGAGCTAATGGGCC 48085 >seq45015 Length=330402 Score = 107 bits (118), Expect = 1e-18 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || || |||| || || ||||||||||| | | | |||||| ||||||||| ||||||| Sbjct 181082 ATCAAGAAAACATAAATATTGGCCCATGCAGGTCTTGAACCTGCGACCTTCGGGTTATTA 181141 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 181142 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 181174 >seq21975 Length=116293 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 79608 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 79549 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 79548 ACTGAGCTAATAGGCC 79533 >seq39375 Length=536480 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 109968 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 109909 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 109908 CTGAGCTAATAGGCC 109894 >seq36339 Length=102597 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||| |||||||||||||||||||||||| |||||| Sbjct 67542 TGGCCCATGCAGGTCTCGAACCTGCGACTTTCGCGTTATTAGCACGACGCTCTAACCAAC 67601 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 67602 TGAGCTAATGGGCC 67615 >seq49467 Length=38580 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | ||||||||| ||||||| ||||||||||| |||||||| || Sbjct 24381 AAAGTGGCCAATGCAGGTATCGAACCTGCGACCTTAGCGTTATTAGCCGGACGCTCTAAC 24322 Query 11512 CAACTGAGCTAATGGGCC 11529 ||| | || ||||||||| Sbjct 24321 CAATTAAGGTAATGGGCC 24304 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261321885101728