Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq48408 118 6e-22
seq8501 113 2e-20
seq1914 113 2e-20
seq53032 111 8e-20
seq51908 111 8e-20
seq50731 111 8e-20
seq13991 111 8e-20
seq48721 109 3e-19
seq46137 109 3e-19
seq35141 109 3e-19
seq34898 109 3e-19
seq26077 109 3e-19
seq45015 107 1e-18
seq21975 107 1e-18
seq39375 105 3e-18
seq36339 104 1e-17
seq49467 84.2 1e-11
>seq48408
Length=241724
Score = 118 bits (130), Expect = 6e-22
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 63677 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 63618
Query 11513 AACTGAGCTAATGGGCCGT 11531
|||||||||||||||||||
Sbjct 63617 AACTGAGCTAATGGGCCGT 63599
>seq8501
Length=261319
Score = 113 bits (124), Expect = 2e-20
Identities = 81/92 (88%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 11440 TAATAAAAA--ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
|| |||||| || |||| |||||||| | | |||||||| ||||||||||||||||||
Sbjct 42423 TATTAAAAAGTATTAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 42481
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||| ||||||||||||||||||||
Sbjct 42482 CACGACGCTCTAACCAACTGAGCTAATGGGCC 42513
>seq1914
Length=304848
Score = 113 bits (124), Expect = 2e-20
Identities = 79/90 (88%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 11443 TAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
|||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||
Sbjct 241347 TAAAAAATGAAAGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 241406
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||||||||
Sbjct 241407 CGACGCTCTAACCAACTGAGCTAATGGGCC 241436
>seq53032
Length=64603
Score = 111 bits (122), Expect = 8e-20
Identities = 82/96 (85%), Gaps = 4/96 (4%)
Strand=Plus/Minus
Query 11438 ATTAATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
||||| ||||| ||| |||||||||| | | |||||||| ||||||||||||||
Sbjct 56333 ATTAAGAAAAATGGAAAATACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 56274
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||||||||||||||
Sbjct 56273 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 56238
>seq51908
Length=309089
Score = 111 bits (122), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 233729 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 233788
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 233789 CAACTGAGCTAATGGGCC 233806
>seq50731
Length=48485
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 44122 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 44063
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 44062 CTGAGCTAATGGGCC 44048
>seq13991
Length=249863
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 169354 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 169413
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 169414 CTGAGCTAATGGGCC 169428
>seq48721
Length=198248
Score = 109 bits (120), Expect = 3e-19
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 124110 AATTGGCCCATGCAGGTGTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 124169
Query 11513 AACTGAGCTAATGGGCC 11529
|||| ||||||||||||
Sbjct 124170 AACTAAGCTAATGGGCC 124186
>seq46137
Length=140959
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 59424 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 59365
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 59364 TGAGCTAATGGGCC 59351
>seq35141
Length=93139
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 27039 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 27098
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 27099 TGAGCTAATGGGCC 27112
>seq34898
Length=67572
Score = 109 bits (120), Expect = 3e-19
Identities = 81/94 (86%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
|||||| ||| |||| || |||||||| | | |||||||| ||||||||||||||||
Sbjct 66606 AATTAAAAAAGTATCATGTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 66547
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||| |||||||||||||||| |||
Sbjct 66546 AGCACGACGCTCTAACCAACTGAGCTAATGAGCC 66513
>seq26077
Length=252038
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 48158 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 48099
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 48098 TGAGCTAATGGGCC 48085
>seq45015
Length=330402
Score = 107 bits (118), Expect = 1e-18
Identities = 80/93 (86%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 11438 ATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|| || |||| || || ||||||||||| | | | |||||| ||||||||| |||||||
Sbjct 181082 ATCAAGAAAACATAAATATTGGCCCATGCAGGTCTTGAACCTGCGACCTTCGGGTTATTA 181141
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 181142 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 181174
>seq21975
Length=116293
Score = 107 bits (118), Expect = 1e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 79608 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 79549
Query 11514 ACTGAGCTAATGGGCC 11529
||||||||||| ||||
Sbjct 79548 ACTGAGCTAATAGGCC 79533
>seq39375
Length=536480
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 109968 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 109909
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 109908 CTGAGCTAATAGGCC 109894
>seq36339
Length=102597
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| |||| |||||||||||||||||||||||| ||||||
Sbjct 67542 TGGCCCATGCAGGTCTCGAACCTGCGACTTTCGCGTTATTAGCACGACGCTCTAACCAAC 67601
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 67602 TGAGCTAATGGGCC 67615
>seq49467
Length=38580
Score = 84.2 bits (92), Expect = 1e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| ||| | | ||||||||| ||||||| ||||||||||| |||||||| ||
Sbjct 24381 AAAGTGGCCAATGCAGGTATCGAACCTGCGACCTTAGCGTTATTAGCCGGACGCTCTAAC 24322
Query 11512 CAACTGAGCTAATGGGCC 11529
||| | || |||||||||
Sbjct 24321 CAATTAAGGTAATGGGCC 24304
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261321885101728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |