Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq49909 143 4e-30 seq52913 141 1e-29 seq50600 140 5e-29 seq44609 134 2e-27 seq7757 134 2e-27 seq459 131 3e-26 seq12596 105 1e-18 seq50473 93.3 7e-15 >seq49909 Length=177029 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || |||||||| || ||||| |||||||| | || || || Sbjct 6829 GATAACATCCAGGGAATTACGAAGCCAGCCATTCGTCGGTTGGCTCGTAGGGGAGGCGTG 6888 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| || ||||||| |||| |||| || |||||||||| || || Sbjct 6889 AAGCGTATATCTGGTCTGATCTATGAGGAGACACGTGGAGTGCTGAAGATCTTTCTAGAG 6948 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||||||| | ||| || |||||||| | | |||||||| || | Sbjct 6949 AACGTGATCCGTGATGCTGTTACCTACACTGAGCACGCCAGGAGAAAGACTGTTACTGCT 7008 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || ||| | || | || ||| | | | ||||| ||||| |||| Sbjct 7009 ATGGATGTTGTTTACGCACTCAAGAGGCAGGGCAGGACTCTCTATGGATTTGGTGGTTA 7067 >seq52913 Length=37963 Score = 141 bits (156), Expect = 1e-29 Identities = 191/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || || |||| | || || ||||||||||| || ||||| |||||||| ||| Sbjct 4986 GCGAAACGACACCGCAAAGTCCTCCGCGATAACATCCAGGGTATCACAAAGCCAGCAATC 5045 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||| ||| | || |||||||||||| || |||| || |||| || |||| Sbjct 5046 AGGCGTTTGGCACGTAGAGGAGGAGTCAAGCGTATCAGTGGACTGATCTACGAGGAGACA 5105 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||||||||| || | | ||| || | ||||||| | || || ||| Sbjct 5106 CGTGGCGTGTTGAAGATCTTTCTGGAAAACGTGATTCGTGATGCTGTGACTTACACTGAG 5165 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | ||||| || || | |||||| | || || || | || | |||||| Sbjct 5166 CATGCGAGGAGGAAGACGGTGACTGCTATGGATGTTGTTTACGCGCTCAAGAGGCAAGGC 5225 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | ||||||||||| |||| Sbjct 5226 CGTACTCTCTATGGTTTTGGTGGTTA 5251 >seq50600 Length=72261 Score = 140 bits (154), Expect = 5e-29 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || |||||||| || ||||| |||||||| | || || || Sbjct 31794 GATAACATCCAGGGAATTACGAAGCCAGCCATTCGTCGGTTGGCTCGTAGGGGAGGCGTG 31853 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| || |||| || |||| |||| || |||||||||| || || Sbjct 31854 AAGCGTATATCTGGTCTGATCTACGAGGAGACACGTGGAGTGCTGAAGATCTTTCTAGAG 31913 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||||||| | ||| || |||||||| | | |||||||| || | Sbjct 31914 AACGTGATCCGTGATGCTGTTACCTACACTGAGCACGCCAGGAGAAAGACTGTTACTGCT 31973 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || ||| | || | || ||| | | | ||||| ||||| ||||| Sbjct 31974 ATGGATGTTGTTTACGCACTCAAGAGGCAGGGCAGGACTCTCTATGGATTTGGTGGTTAA 32033 >seq44609 Length=72944 Score = 134 bits (148), Expect = 2e-27 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| ||||| || | ||||| ||||||||||| |||||||| ||||| ||||| Sbjct 53344 GCTAAACGTCACCGTAAGGTGCTTCGTGATAACATCCAGGGAATCACGAAGCCTGCTATT 53285 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || ||||| || ||| | ||||| ||| | || || |||| Sbjct 53284 CGGCGTTTGGCTCGTAGAGGAGGAGTGAAACGTATTTCTGGTTTGATTTACGAGGAGACA 53225 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||||| || | ||| || || | ||||||| | ||| ||||| Sbjct 53224 CGAGGTGTATTGAAGATATTTTTGGAGAATGTGATTCGTGATGCTGTAACCTACACCGAA 53165 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| | |||||||| || | |||||| | || || || Sbjct 53164 CACGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTACGC 53121 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || |||||||| ||||| || || || ||| |||||||| | || || | Sbjct 56490 GAGACAACATTCAGGGAATCACGAAGCCTGCAATTCGGCGTTTGGCTCGTAGGGGAGGGG 56431 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| | ||||| ||| | || || |||| ||||| || |||||||| || | Sbjct 56430 TGAAGCGCATTTCTGGTTTGATTTACGAGGAGACTCGTGGAGTGTTGAAGATATTTTTGG 56371 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | || || || ||||||| | ||||||||||| Sbjct 56370 AGAATGTGATTCGTGATGCTGTGACTTACACTGAACACGCTAGGAGGAAGACTGTCACTG 56311 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || ||| | || | || ||| | | |||| || ||||| ||| Sbjct 56310 CCATGGATGTTGTTTACGCACTCAAGAGGCAGGGCAGGACTCTTTACGGATTTGGGGGTT 56251 Query 16698 A 16698 | Sbjct 56250 A 56250 >seq7757 Length=121816 Score = 134 bits (148), Expect = 2e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || || || ||||||||||| ||| | || |||||| | ||||| | Sbjct 9433 GAGATAACATCCAGGGGATTACAAAGCCAGCTATTCGTAGGCTTGCTCGTAGGGGTGGTG 9492 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||||| ||| | || || |||| |||| || | |||||||| || Sbjct 9493 TCAAGCGTATTTCTGGGTTGATTTACGAGGAGACACGTGGAGTGCTCAAGATCTTTCTAG 9552 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | ||| || |||||||||| | |||||||| || Sbjct 9553 AGAATGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGAGAAAGACTGTTACTG 9612 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || || || | || | || || | | | ||||| |||||| ||| Sbjct 9613 CTATGGATGTTGTGTACGCTCTCAAGAGGCAGGGAAGGACCTTGTATGGATTTGGAGGTT 9672 Query 16698 AA 16699 || Sbjct 9673 AA 9674 >seq459 Length=167973 Score = 131 bits (144), Expect = 3e-26 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||| || ||||| || | ||| |||||||| | || Sbjct 9074 CTTCGTGATAACATCCAAGGTATCACAAAACCAGCAATTAGGCGTTTGGCTCGTAGAGGA 9015 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || |||| | ||||||| |||| |||| || |||||||||| Sbjct 9014 GGAGTGAAGCGTATCAGTGGACTCATCTATGAGGAGACACGTGGCGTGCTGAAGATCTTT 8955 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | || || | ||||||| | ||| || ||||||||| | |||||||| Sbjct 8954 TTGGAAAATGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTCGTAGAAAGACTGTG 8895 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| | || | || || | | | ||||| |||||| Sbjct 8894 ACGGCTATGGATGTTGTTTATGCTCTCAAGAGACAGGGAAGGACTTTGTATGGGTTTGGA 8835 Query 16694 AGTTAAT 16700 |||||| Sbjct 8834 GGTTAAT 8828 >seq12596 Length=235081 Score = 105 bits (116), Expect = 1e-18 Identities = 184/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || || |||| | ||| || |||||||| || |||||||| ||||||||||| Sbjct 108663 GCAAAACGACACCGCAAAGTTCTCCGTGATAACATTCAGGGAATCACAAAGCCAGCTATT 108722 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | || |||||| | |||||||| ||| | || || || | || || |||| Sbjct 108723 CGGAGACTAGCTCGTAGGGGTGGAGTGAAGAGAATCAGCGGGCTGATTTACGAGGAGACC 108782 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || ||||||| || | | | || || | ||||||| | || || ||| Sbjct 108783 AGAGGAGTCCTGAAGATATTTTTGGAAAATGTGATTCGTGATGCTGTTACTTACACTGAG 108842 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| | |||||||| || | |||||| | || ||| | | || | |||||| Sbjct 108843 CACGCTAGGAGAAAGACTGTGACTGCAATGGATGTTGTTTATTCTCTAAAGAGGCAAGGC 108902 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| |||||| ||| || Sbjct 108903 AGGACCCTTTATGGATTTGGAGGTTGAT 108930 Score = 102 bits (112), Expect = 1e-17 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || ||||| || ||||| ||||| | | | || | | ||| Sbjct 113529 CTCCGTGATAACATTCAGGGAATTACTAAGCCTGCTATTAGGAGATTAGCGAGAAGAGGT 113588 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || | |||||||||| | | ||||||||||| || Sbjct 113589 GGAGTGAAGAGAATCAGCGGGCTGATATATGAAGAGACGAGAGGAGTTTTGAAGATATTT 113648 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | || || |||||||||| | |||||||| Sbjct 113649 TTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTT 113708 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| | || || | ||||| | |||||| | | ||||||||||||| Sbjct 113709 ACCGCAATGGATGTTGTTTACTCTTTGAAGAGACAAGGCAGGACTCTTTATGGTTTTGGT 113768 Query 16694 AGTTAA 16699 ||||| Sbjct 113769 GGTTAA 113774 >seq50473 Length=50850 Score = 93.3 bits (102), Expect = 7e-15 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || ||||| || ||||| ||||| | | || ||||| | || ||| Sbjct 9655 CGTGACAATATTCAGGGAATTACTAAGCCTGCTATTAGGAGGCTAGCTCGAAGAGGCGGA 9714 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | | |||||| | || ||||||| |||| || ||||||||||| || Sbjct 9715 GTGAAGAGAATTAGCGGATTGATTTACGAAGAGACACGTGGAGTGTTGAAGATCTTTCTA 9774 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| | ||||| ||||| |||| | |||||||| || Sbjct 9775 GAAAATGTGATTCGTGATGCTGTGACTTATACTGAGCATGCTAGGAGAAAGACTGTTACT 9834 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | || || | | ||||||| ||||| || Sbjct 9835 GCTATGGATGTTGTTTATGCGCTTAAGAGACAGGGTAGGACTCTTTATGGGTTTGGTGGT 9894 Query 16697 TAATCTTCT 16705 ||| |||| Sbjct 9895 TAAATTTCT 9903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79026624697704