Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq38302 178 2e-39
seq44697 168 8e-37
>seq38302
Length=59671
Score = 178 bits (196), Expect = 2e-39
Identities = 567/874 (65%), Gaps = 14/874 (2%)
Strand=Plus/Plus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
||||| || || || || | || || || |||||||| || |||| || ||
Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
||||| ||||||||||||| | |||| || | || ||| | ||||| || | |
Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
|||||||| || || ||||| || ||| | |||||| || | ||||||||| | ||
Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979
Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252
| || || || || | ||| || ||| || || ||||||| | |||
Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039
Query 33253 GATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGCG 33309
|||| ||| ||| | | | ||| ||| || | | |||||| |||
Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAAC---TATAAAGCAAACAAGCG 23096
Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369
||||| ||||||| ||| ||||| || ||||| ||||| || || || | ||| |||
Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156
Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429
|||| || |||||||| | ||| ||||| | | || |||||| || || || |||
Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCAGAGAAAAAAATACCT 23216
Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCAC 33486
|| || || ||| |||| | | ||| || | ||| | ||| |||||
Sbjct 23217 TCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAA 23273
Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546
| | ||||| | |||||||| | ||||| || || || || | || || |
Sbjct 23274 CGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAAT 23333
Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606
| ||||||| | | || || | || | || | | ||||| ||||| || ||
Sbjct 23334 CTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAG 23393
Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666
|| ||||||||||| || || || || ||||||||| | ||||||| || || |||
Sbjct 23394 TGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACT 23453
Query 33667 TCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725
||| | || | | | || || | ||||| || || ||||| ||| ||||||||
Sbjct 23454 TCT-TTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 23512
Query 33726 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33785
|| | || || | || |||| |||| | |||||||| | | ||| | | | |
Sbjct 23513 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGT 23572
Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845
||| ||||| ||| ||||||||| | ||||| || || || || ||||| |||||
Sbjct 23573 ATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 23632
Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879
| ||| || | ||||| |||||||| |||
Sbjct 23633 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 23666
>seq44697
Length=182102
Score = 168 bits (186), Expect = 8e-37
Identities = 566/874 (65%), Gaps = 14/874 (2%)
Strand=Plus/Plus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
||||| || || || || | || || || |||||||| || |||| || ||
Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
||||| ||||||||||||| | |||| || | || | | | ||||| || | |
Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
|||||||| || || ||||| || ||| | |||||| || | ||||||||| | ||
Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159
Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252
| || || || || | ||| || ||| || || ||||||| | |||
Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219
Query 33253 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 33309
|||| ||| ||| | | | | | || ||| || | | |||||| ||
Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCA 113276
Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369
||||| ||||||| ||| ||||| ||| ||||| ||||| || || || | ||| |||
Sbjct 113277 AAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGC 113336
Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429
|||| || |||||||| | ||| ||||| | | || ||| || || || || |||
Sbjct 113337 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGGAGAAAAAAATACCT 113396
Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCAC 33486
|| || |||||| |||| | | ||| || | ||| | ||| |||||
Sbjct 113397 TCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAA 113453
Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546
| | ||||| | |||||||| | ||||| || || || || | || || |
Sbjct 113454 CGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAAT 113513
Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606
| ||||||| | | || || | || | || | | ||||| ||||| || ||
Sbjct 113514 CTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAG 113573
Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666
|| ||||||||||| || || || || ||||||||| | ||||||| || || |||
Sbjct 113574 TGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACT 113633
Query 33667 TCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725
||| | || | | |||| || | ||||| || || ||||| ||| ||||||||
Sbjct 113634 TCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 113692
Query 33726 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33785
|| | || || | || |||| |||| | |||||||| | | ||| | | | |
Sbjct 113693 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTT 113752
Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845
||| ||| | ||| |||||||| | ||||| || || || || ||||| |||||
Sbjct 113753 ATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 113812
Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879
| ||| || | ||||| |||||||| |||
Sbjct 113813 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622533500764480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |