Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq38302 178 2e-39 seq44697 168 8e-37 >seq38302 Length=59671 Score = 178 bits (196), Expect = 2e-39 Identities = 567/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||| || || || || | || || || |||||||| || |||| || || Sbjct 22800 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 22859 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | |||| || | || ||| | ||||| || | | Sbjct 22860 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACCCAAAGCATCCAAC 22919 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 22920 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 22979 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 22980 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATC 23039 Query 33253 GATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACATGCG 33309 |||| ||| ||| | | | ||| ||| || | | |||||| ||| Sbjct 23040 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTCAACAAAC---TATAAAGCAAACAAGCG 23096 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| ||||||| ||| ||||| || ||||| ||||| || || || | ||| ||| Sbjct 23097 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 23156 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 |||| || |||||||| | ||| ||||| | | || |||||| || || || ||| Sbjct 23157 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCAGAGAAAAAAATACCT 23216 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCAC 33486 || || || ||| |||| | | ||| || | ||| | ||| ||||| Sbjct 23217 TCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAA 23273 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 23274 CGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAACTGCGCGGAATAAT 23333 Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 | ||||||| | | || || | || | || | | ||||| ||||| || || Sbjct 23334 CTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAG 23393 Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666 || ||||||||||| || || || || ||||||||| | ||||||| || || ||| Sbjct 23394 TGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACT 23453 Query 33667 TCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725 ||| | || | | | || || | ||||| || || ||||| ||| |||||||| Sbjct 23454 TCT-TTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 23512 Query 33726 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33785 || | || || | || |||| |||| | |||||||| | | ||| | | | | Sbjct 23513 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGGT 23572 Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||| ||||| ||| ||||||||| | ||||| || || || || ||||| ||||| Sbjct 23573 ATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 23632 Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | ||| || | ||||| |||||||| ||| Sbjct 23633 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 23666 >seq44697 Length=182102 Score = 168 bits (186), Expect = 8e-37 Identities = 566/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||| || || || || | || || || |||||||| || |||| || || Sbjct 112980 TTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 113039 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | |||| || | || | | | ||||| || | | Sbjct 113040 TCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAAC 113099 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 113100 AATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 113159 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 113160 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 113219 Query 33253 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 33309 |||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 113220 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCA 113276 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| ||||||| ||| ||||| ||| ||||| ||||| || || || | ||| ||| Sbjct 113277 AAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGAAGGTTAATCCAGGC 113336 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 |||| || |||||||| | ||| ||||| | | || ||| || || || || ||| Sbjct 113337 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGGAGAAAAAAATACCT 113396 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCAC 33486 || || |||||| |||| | | ||| || | ||| | ||| ||||| Sbjct 113397 TCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAA 113453 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 113454 CGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAAT 113513 Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 | ||||||| | | || || | || | || | | ||||| ||||| || || Sbjct 113514 CTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAG 113573 Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666 || ||||||||||| || || || || ||||||||| | ||||||| || || ||| Sbjct 113574 TGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGGGCCTCGGCAACTTGGACT 113633 Query 33667 TCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725 ||| | || | | |||| || | ||||| || || ||||| ||| |||||||| Sbjct 113634 TCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 113692 Query 33726 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33785 || | || || | || |||| |||| | |||||||| | | ||| | | | | Sbjct 113693 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAGGGTTTCCCAGTGACGGTT 113752 Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||| ||| | ||| |||||||| | ||||| || || || || ||||| ||||| Sbjct 113753 ATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 113812 Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | ||| || | ||||| |||||||| ||| Sbjct 113813 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 113846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622533500764480