Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq50708 102 8e-17 seq51452 86.0 6e-12 seq37995 84.2 2e-11 >seq50708 Length=321788 Score = 102 bits (112), Expect = 8e-17 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| ||||||| ||||| ||||| || ||||| |||||| Sbjct 282294 GACACCATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCCGGATCAA 282235 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTATA 26946 ||||| | |||| | || ||||||||||| |||| ||| || | || || |||| Sbjct 282234 CAAAGGTTGATTTTTGCTGGAAAACAACTCGAGGATGGGCGAACACTT--GCTGATTATA 282177 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| || ||||| ||| ||||||| || || | ||| | ||||| Sbjct 282176 ACATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 282128 >seq51452 Length=252770 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || |||||||| ||| | ||||| | ||| | || Sbjct 58443 AATGCAAATCTTTGTTAAGACCTTAACTGGGAAAACAATCACATTGGAAGTTGAGAGCTC 58384 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 58383 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 58324 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||| || || | | || || ||| | ||||||| || | | |||||||| Sbjct 58323 GCAAAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 58264 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || || |||| || ||||| | ||| | || |||| Sbjct 58263 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGGAA 58214 >seq37995 Length=189229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 26857 TTACC--GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACA 26914 ||||| |||||||||||||||||||| || || || || || |||| | || ||||| Sbjct 163826 TTACCAGGACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACA 163885 Query 26915 ACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCT 26974 | ||||||| | ||| | || || || || || |||||||| || | || || Sbjct 163886 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCT 163945 Query 26975 GGTCCTGAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| |||| || |||||||| || |||||||| Sbjct 163946 GGTTTTGAGGCTCAGAGGAGG--AACTATGATTA 163977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478344520300160