Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq44697 113 1e-19 seq38302 111 4e-19 seq5136 91.5 4e-13 seq49945 87.8 5e-12 >seq44697 Length=182102 Score = 113 bits (124), Expect = 1e-19 Identities = 468/731 (64%), Gaps = 18/731 (2%) Strand=Plus/Minus Query 22294 GAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATAT 22353 |||||| | |||||| || | ||||| ||||||||| | ||| | || | || Sbjct 113620 GAGGCCCGTGCTTTCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTAC 113561 Query 22354 TCTATGATGCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAAACTTATTCCGCGCG 22413 | || | ||| |||| | | | || |||||| || | | ||||||||||| Sbjct 113560 AGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCA 113501 Query 22414 ATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT 22473 || || || | | || |||| ||||| | ||||| || ||||| || | Sbjct 113500 GTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGACGGT 113441 Query 22474 ---GAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTT 22530 ||| |||| ||||| ||| | ||||||||||| || ||||| ||||| || Sbjct 113440 TCCGAAA---CATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTC 113384 Query 22531 TCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACG 22590 || ||| |||||||| || || ||| ||||||| || | | ||||| || |||| Sbjct 113383 TCCGGAAGCTTTTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACC 113324 Query 22591 TTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTA 22650 || || || ||||||||| | || || ||| | || |||||||| ||| |||| Sbjct 113323 TTCTCGAACGAGTTAATTTCTAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTT 113264 Query 22651 TATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAAT 22710 ||| | | | | || ||| | | ||| || | ||| || || || Sbjct 113263 TAT---AGTTTGTTAAGGACGAAGCTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGAT 113207 Query 22711 GCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACC-AGTAAGTCTCATTGGTAT 22769 || || || | ||| | ||| | || || ||| | || || | || | || || Sbjct 113206 GCTGTGGAGATAGAAAGGGAGTTTGTGTGTGATGCGCTGCCTTGTGCG-CTGGTGGGAAT 113148 Query 22770 CAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACT 22829 |||| || | ||||| | ||| ||| ||||||| || ||| | | || | | | Sbjct 113147 GAATGGAGATTTGATGAGCAAATACATTGAATTTGTGGCTGATAGATTGTTGGATGCTTT 113088 Query 22830 CGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACT 22889 ||||||| ||| || || | ||||| ||||| |||||||| || ||| | Sbjct 113087 GGGTTATGATAAGTTGTACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTT 113028 Query 22890 TGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTAT 22949 |||| ||||| |||||||| || || |||||||| || || ||||| || |||||| Sbjct 113027 ACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAAAAGGCTTCTGTTAT 112968 Query 22950 GGATGCA--TTGAATG---ATAGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAA 23004 | | || ||||||| || || | | || | || | || |||||||| || ||| Sbjct 112967 G--TCCAGTTTGAATGGGAATGGTGCTACTCATGAGTTCAAGTTGGATGAAGACTTCTAA 112910 Query 23005 TTATTTGTATT 23015 | || |||| Sbjct 112909 ATTTTACTATT 112899 >seq38302 Length=59671 Score = 111 bits (122), Expect = 4e-19 Identities = 467/730 (64%), Gaps = 18/730 (2%) Strand=Plus/Minus Query 22294 GAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATAT 22353 |||||| | |||||| || | ||||| ||||||||| | ||| | || | || Sbjct 23440 GAGGCCCGTGCTTTCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTAC 23381 Query 22354 TCTATGATGCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAAACTTATTCCGCGCG 22413 | || | ||| |||| | | | || |||||| || | | ||||||||||| Sbjct 23380 AGTCTGCTTCTAGAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCA 23321 Query 22414 ATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT 22473 || || |||| | || |||| ||||| | ||||| || ||||| || | Sbjct 23320 GTTGAGACTATTCCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGACGGT 23261 Query 22474 ---GAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTT 22530 ||| |||| ||||| ||| | |||||||| || || ||||| ||||| || Sbjct 23260 TCCGAA---ACATTTGCGGAGCGTTTGGTTGCATTTTCTTGTGTGGAAGGTATTTTTTTC 23204 Query 22531 TCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACG 22590 |||||| |||||||| || || ||| ||||||| || | | ||||| || |||| Sbjct 23203 TCTGGAAGCTTTTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACT 23144 Query 22591 TTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTA 22650 || || || ||||||||| | || || ||| | || ||||| || ||| |||| Sbjct 23143 TTCTCGAACGAGTTAATTTCAAGGGACGAAGGTTTGCACTGTGATTTCGCTTGTTTGCTT 23084 Query 22651 TATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAAT 22710 ||| | | | | || ||| | | ||| || | ||| || || || Sbjct 23083 TAT---AGTTTGTTGAGGACGAAGCTTACTGAGGAACGAGTTAAGGGGATTGTTGCAGAT 23027 Query 22711 GCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACC-AGTAAGTCTCATTGGTAT 22769 || || || | ||| | ||| | || || ||| | || || | || | || || Sbjct 23026 GCTGTGGAGATAGAAAGGGAGTTTGTGTGTGATGCGCTGCCTTGTGCG-CTGGTGGGAAT 22968 Query 22770 CAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACT 22829 |||| || | ||||| | ||| ||| ||||||| || ||| | | || | | | Sbjct 22967 GAATGGAGATTTGATGAGCAAATACATTGAATTTGTGGCTGATAGATTGTTGGATGCTTT 22908 Query 22830 CGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACT 22889 |||||| ||| || || | ||||| ||||| |||||||| || ||| | Sbjct 22907 GGGTTATAATAAGTTGTACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTT 22848 Query 22890 TGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTAT 22949 |||| ||||| |||||||| || || |||||||| || || ||||| || |||||| Sbjct 22847 ACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAAAAGGCTTCTGTTAT 22788 Query 22950 GGATGCA--TTGAATG---ATAGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAA 23004 | | || ||||||| || | | | || | || || || |||||||| || ||| Sbjct 22787 G--TCCAGTTTGAATGGGAATGGGGCTAGTCATGACTTCACGTTGGATGAAGACTTCTAA 22730 Query 23005 TTATTTGTAT 23014 | || |||| Sbjct 22729 ATTTTAGTAT 22720 >seq5136 Length=107705 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | ||||| | | || || || ||||||||||||||||||||||| Sbjct 75431 CAGTTCTATGTAGCCAACGGGGAGTTATCCTGTCAGATGTATCAGCGATCTGCTGATATG 75372 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| || || || ||||| |||||| ||| || | || || ||| | || |||||| Sbjct 75371 GGTCTGGGAGTGCCATTTAACATTGCATCTTATGCCTTGCTGACATGCATGATAGCTCAT 75312 Query 111822 TTT 111824 || Sbjct 75311 GTT 75309 >seq49945 Length=41976 Score = 87.8 bits (96), Expect = 5e-12 Identities = 147/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || |||||||| | ||| || |||||| | |||||| ||||| ||| || || ||| Sbjct 16834 ATTGAGGGTATATATGATACTCTTAAGGAGTGTGCTGTTATTAGCAAATCAGCTGGGGGA 16775 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC-AGGGG 363754 ||||| || || | ||||| | ||||| || | ||||||||||| || || | || Sbjct 16774 ATTGGAGTTTCTGTGCACAACATACGTGCTACTGGG-AGTTACATTCGTGGAACAAATGG 16716 Query 363755 GATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCG 363814 || | || ||||| | ||||| ||||| ||||| || | | ||||| || || || | Sbjct 16715 GACA-TCAAATGGAATTGTTCCTATGCTGCGTGTATTCAATGACACTGCTAGATATGTTG 16657 Query 363815 ACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| || || || || | |||||| Sbjct 16656 ACCAAGGAGGTGGCAAAAG-AAAGGG 16632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302466403946096