Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq51452 104 2e-17 seq32633 95.1 1e-14 seq19192 93.3 4e-14 seq3636 91.5 1e-13 seq50708 87.8 2e-12 seq48040 84.2 2e-11 >seq51452 Length=252770 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| ||||| || ||| | ||||| | ||||| ||| | Sbjct 4522 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 4463 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || || || || ||||| || | || || || Sbjct 4462 GGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCGCGCCAGACCA 4403 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||| ||||||| || || |||||| | ||||||| |||| || || ||||||| Sbjct 4402 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAA-CGCTGGCTGATTATA 4344 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || || ||||| || |||| |||| | ||||||||||| || Sbjct 4343 ACATCCAGAAGGAATCCACCCTTCACCTAGTTCTCAGATTGAGAGGTGG 4295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||| ||| | || || | ||||| ||| | Sbjct 58443 AATGCAAATCTTTGTTAAGACCTTAACTGGGAAAACAATCACATTGGAAGTTGAGAGCTC 58384 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || ||| ||| ||||| |||||||| || || ||||| Sbjct 58383 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 58324 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || ||||| | | || |||||| | ||||||| || | | || ||||| Sbjct 58323 GCAAAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 58264 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||| || || ||| | || |||| Sbjct 58263 CATTCAAAAGGAGTCAACACTCCACCTAGT 58234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||||||| | || || | ||||| ||| | Sbjct 58899 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 58840 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| ||||| || || || || || ||||| Sbjct 58839 GGACACGATAGACAATGTTAAGTCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCA 58780 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||||| | || |||||| | ||||||| |||| | |||||||| Sbjct 58779 GCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 58720 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || |||| | || | || ||||| || || Sbjct 58719 CATCCAGAAGGAATCAACCCTTCACCTTGTTCTCAGGTTGAGGGGTGG 58672 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||||||||| |||||| | || || | ||||| ||| | Sbjct 59127 AATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 59068 Query 24050 CGACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 || || || || | || || || ||| ||| || || ||||| || || || || | Sbjct 59067 GGATACTATTGATAATGTTAAGACGAAA-ATTCAAGATAAGGAAGGTATTCCACCGGACC 59009 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| |||||||||| | || |||||| | ||||||| | | | ||||||| Sbjct 59008 AACAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATA 58949 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | |||||||| || || ||| | || |||| Sbjct 58948 ATATTCAAAAGGAGTCAACACTCCACCTAGT 58918 >seq32633 Length=132462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| | Sbjct 60884 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTTGAGAGCTCG 60825 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||| ||| || || ||||| || || || || || Sbjct 60824 GACACCATCGACAATGTTAAGGCAAAAATTCAAGATAAGGAAGGGATTCCACCTGACCAG 60765 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || |||| | || ||||| || || |||| || || ||| ||||| || Sbjct 60764 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGAAG-GACACTAGCTGATTACAA 60706 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| ||||| ||||| || | ||||| ||| Sbjct 60705 CATCCAAAAGGAATCAACCCTCCATTTGGTG 60675 >seq19192 Length=430667 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || |||||| | || ||| | || || ||| Sbjct 373632 ATGCAAATCTTTGTCAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAGAGTTCG 373573 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || ||| ||||| ||||| || || || || || Sbjct 373572 GACACAATTGATAATGTGAAGGCCAAAATTCAAGACAAGGAAGGGATTCCCCCAGACCAG 373513 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||| ||||||| | | || |||||||| ||||||| || | || | || ||||||| Sbjct 373512 CAGCGACTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTT--GCTGATTATA 373455 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || || || || ||| ||||| | ||||| | ||||| ||||| Sbjct 373454 ACATACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGG 373406 >seq3636 Length=134301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | || |||||| | ||||| |||| || ||| | Sbjct 15171 ATGCAAATCTTTGTAAAGACGCTCACCGGAAAAACCATTACTCTCGAGGTTGAGAGTTCC 15230 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| ||||| || ||||||||||| Sbjct 15231 GACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCTCCCGATCAG 15290 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || || |||| | | | | ||| || ||| Sbjct 15291 CAGAGGTTGATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCCGACTACAAC 15350 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| ||||| || |||| Sbjct 15351 ATCCAAAAGGAATCCACCCTTCA 15373 >seq50708 Length=321788 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| ||||||| ||||| ||||| || ||||| |||||| Sbjct 282294 GACACCATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCCGGATCAA 282235 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 || || |||||| | || || |||||||| |||| ||| || | || ||||||| Sbjct 282234 CAAAGGTTGATTTTTGCTGGAAAACAACTCGAGGATGGGCGAACACTT--GCTGATTATA 282177 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||| || ||||| || | ||| | ||||| Sbjct 282176 ACATTCAGAAGGAATCCACTCTCCATCTTGTGTT 282143 >seq48040 Length=167738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||||| || ||||||||||||||||| ||||| ||||||||||||| | || || || Sbjct 54640 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 54699 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | ||||||| | | | | ||||| |||||||| |||||||| || |||| | Sbjct 54700 GTTGGAAGATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCT 54759 Query 24197 AGTGTTAAGATTGAGAGGAGG-ACTATAAT 24225 || || || | || ||||| ||||| || Sbjct 54760 TGTTTTGAGGCTCAGGGGAGGAACTATGAT 54789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429657617514840