Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq50758 98.7 8e-16 seq51452 93.3 4e-14 seq48040 93.3 4e-14 >seq50758 Length=122349 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| || || || ||||| || ||| | ||| || | | Sbjct 118036 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 118095 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || || ||| |||||||| || |||| ||||| Sbjct 118096 GACACAATT-GACAACGTTAAGGCGAAGATTCAGGATAAAGAGGGAATCCCACCAGATCA 118154 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| |||||||| || ||||||| | ||| | || ||||| || Sbjct 118155 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTAGCTGATTACAA 118214 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||||| || ||||| ||| | || ||||| Sbjct 118215 CATTCAGAAGGAGTCGACTCTTCACTTGGTG 118245 >seq51452 Length=252770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| ||||| | |||||||||||||| || | ||| ||| | Sbjct 4066 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 4007 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | ||||| || || ||| ||| ||||| || ||| | || || | Sbjct 4006 AGACAC-GATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATTCCACCAGACC 3948 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||| | ||| || || || || || |||| | || | || ||||| | Sbjct 3947 AGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCTGATTACA 3888 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 | ||||| || ||||||||| | ||| | ||| |||| || | || ||| Sbjct 3887 ATATTCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 3838 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || | || || ||||| || || | ||| ||| | Sbjct 58443 AATGCAAATCTTTGTTAAGACCTTAACTGGGAAAACAATCACATTGGAAGTTGAGAGCTC 58384 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || ||||||| || || |||||| |||| |||| Sbjct 58383 GGACACGATTG-ACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATC 58325 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| || || | ||| || || ||||| ||||||| | || | || || |||| Sbjct 58324 AGCAAAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTTGCTGACTATA 58265 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||||||||| ||||| || Sbjct 58264 ACATTCAAAAGGAGTCAAC 58246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || |||||||| || || | ||| ||| | Sbjct 58899 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 58840 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | ||||| || || |||||| || || || || |||| ||||| Sbjct 58839 GGACAC-GATAGACAATGTTAAGTCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATC 58781 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | |||| ||| || || ||||||||||||| | ||| |||| ||||||| Sbjct 58780 AGCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATA 58721 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| || || || || || Sbjct 58720 ACATCCAGAAGGAATCAAC 58702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| ||||| | || || ||||||||||| | ||| ||| | Sbjct 4522 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 4463 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || ||||| ||||| ||||| || | || || Sbjct 4462 GGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCGCGCCAGACCA 4403 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| || || || ||||||||||||| | ||| |||| |||||||| Sbjct 4402 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAA 4343 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || || || || || | || | || | |||||| |||| || Sbjct 4342 CATCCAGAAGGAATCCACCCTTCACCTAGTTCTCAGATTGAGAGGTGG 4295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| | || |||||||| || || | ||| ||| | Sbjct 59127 AATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 59068 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| | || || |||||| ||||| ||||| | || || || Sbjct 59067 GGATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 59008 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||||| |||| ||| || || ||||| ||||||| || |||| |||||||| Sbjct 59007 ACAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 58948 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||||| ||||| || Sbjct 58947 TATTCAAAAGGAGTCAAC 58930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| ||||| | |||||||| ||||| || | ||| ||| | Sbjct 58215 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 58156 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || || || ||||||||||| | || || | Sbjct 58155 AGACACGATTG-ACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 58097 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || || || | ||| || ||||| || || |||| | || |||| || || | Sbjct 58096 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACA 58037 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 | || || || ||||||||| | ||| | ||| |||| ||| | || ||| Sbjct 58036 ATATCCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGTTGAGGGGTGGA 57987 >seq48040 Length=167738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| |||| ||| || ||||| || ||| Sbjct 54647 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 54706 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| |||| ||||| |||||||| ||||| || ||| | || | || ||| Sbjct 54707 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTTG 54766 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 54767 AGGCTCAGGGGAGGAA 54782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425068590823360