Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq50758 98.7 8e-16
seq51452 93.3 4e-14
seq48040 93.3 4e-14
>seq50758
Length=122349
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| ||||||||||| || || || ||||| || ||| | ||| || | |
Sbjct 118036 ATGCAAATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 118095
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| || ||||| || || || ||| |||||||| || |||| |||||
Sbjct 118096 GACACAATT-GACAACGTTAAGGCGAAGATTCAGGATAAAGAGGGAATCCCACCAGATCA 118154
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || | || | ||| |||||||| || ||||||| | ||| | || ||||| ||
Sbjct 118155 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTAGCTGATTACAA 118214
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495
|||||| || ||||| ||| | || |||||
Sbjct 118215 CATTCAGAAGGAGTCGACTCTTCACTTGGTG 118245
>seq51452
Length=252770
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| ||||| | |||||||||||||| || | ||| ||| |
Sbjct 4066 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 4007
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| | | ||||| || || ||| ||| ||||| || ||| | || || |
Sbjct 4006 AGACAC-GATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATTCCACCAGACC 3948
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || ||||| | ||| || || || || || |||| | || | || ||||| |
Sbjct 3947 AGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCTGATTACA 3888
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513
| ||||| || ||||||||| | ||| | ||| |||| || | || |||
Sbjct 3887 ATATTCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 3838
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| || || | || || ||||| || || | ||| ||| |
Sbjct 58443 AATGCAAATCTTTGTTAAGACCTTAACTGGGAAAACAATCACATTGGAAGTTGAGAGCTC 58384
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| ||| |||| || || ||||||| || || |||||| |||| ||||
Sbjct 58383 GGACACGATTG-ACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATC 58325
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
||||||| || || | ||| || || ||||| ||||||| | || | || || ||||
Sbjct 58324 AGCAAAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTTGCTGACTATA 58265
Query 115464 ACATTCAAAAAGAGTCTAC 115482
|||||||||| ||||| ||
Sbjct 58264 ACATTCAAAAGGAGTCAAC 58246
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||||||||| || || | || |||||||| || || | ||| ||| |
Sbjct 58899 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 58840
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| | | ||||| || || |||||| || || || || |||| |||||
Sbjct 58839 GGACAC-GATAGACAATGTTAAGTCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATC 58781
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || | |||| ||| || || ||||||||||||| | ||| |||| |||||||
Sbjct 58780 AGCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATA 58721
Query 115464 ACATTCAAAAAGAGTCTAC 115482
|||| || || || || ||
Sbjct 58720 ACATCCAGAAGGAATCAAC 58702
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| ||||| | || || ||||||||||| | ||| ||| |
Sbjct 4522 AATGCAAATCTTTGTTAAAACCTTAACCGGGAAAACCATTACATTGGAAGTTGAGAGCTC 4463
Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| | || || ||||| ||||| ||||| || | || ||
Sbjct 4462 GGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCGCGCCAGACCA 4403
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || || |||| || || || ||||||||||||| | ||| |||| ||||||||
Sbjct 4402 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAA 4343
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||| || || || || || | || | || | |||||| |||| ||
Sbjct 4342 CATCCAGAAGGAATCCACCCTTCACCTAGTTCTCAGATTGAGAGGTGG 4295
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
|||||||||||| || ||||| | || |||||||| || || | ||| ||| |
Sbjct 59127 AATGCAAATTTTCGTTAAAACATTAACCGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 59068
Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|| ||| ||| | || || |||||| ||||| ||||| | || || ||
Sbjct 59067 GGATACTATTGATAATGTTAAGACGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 59008
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||||||| |||| ||| || || ||||| ||||||| || |||| ||||||||
Sbjct 59007 ACAAAGACTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 58948
Query 115465 CATTCAAAAAGAGTCTAC 115482
|||||||| ||||| ||
Sbjct 58947 TATTCAAAAGGAGTCAAC 58930
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| ||||| ||||| | |||||||| ||||| || | ||| ||| |
Sbjct 58215 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 58156
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| ||| |||| || || || || ||||||||||| | || || |
Sbjct 58155 AGACACGATTG-ACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 58097
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| || || || | ||| || ||||| || || |||| | || |||| || || |
Sbjct 58096 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACA 58037
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513
| || || || ||||||||| | ||| | ||| |||| ||| | || |||
Sbjct 58036 ATATCCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGTTGAGGGGTGGA 57987
>seq48040
Length=167738
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438
|||||||||||| | || ||||||||| ||||| |||| ||| || ||||| || |||
Sbjct 54647 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 54706
Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498
|||| ||| |||| ||||| |||||||| ||||| || ||| | || | || |||
Sbjct 54707 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTTG 54766
Query 115499 AGATTGCGAGGAGGAA 115514
|| | | |||||||
Sbjct 54767 AGGCTCAGGGGAGGAA 54782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425068590823360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |