Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq50574 102 7e-17 seq50758 98.7 8e-16 seq51452 96.9 3e-15 >seq50574 Length=377344 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| |||||| ||||||||||| || ||||||||||| || Sbjct 94593 CCTCCCCTCAGCCTCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 94652 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| || || || ||| | || |||| ||| ||||| || Sbjct 94653 AGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAATATTAGCCTCTGCTGGTCTGGGGGA 94712 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | ||||| ||| Sbjct 94713 ATCCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCAATGGTGTCAGAACTCTCGA 94770 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||| || |||||||| || |||||||| Sbjct 94771 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 94819 >seq50758 Length=122349 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || || || || || |||| || | | || |||||||| Sbjct 118922 TGCAGGGTGGACTCCTTCTGAATATTATAATCAGCCAGAGTCCTTCCATCTTCCAATTGC 118863 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || |||||| | || |||| ||| || ||| || | ||||| ||||| || || Sbjct 118862 TTCCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA 118803 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | | ||| || ||| |||| ||||||||||| |||| Sbjct 118802 GCT--TTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGG 118745 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| |||||| |||||||||||||| Sbjct 118744 TCAACGTTTTCACAAAAATCTGCAT 118720 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || || ||||| || |||||||||||||| | |||| || |||| Sbjct 118019 AGCACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCT 117960 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | || |||| ||| |||||| || | || || ||||| Sbjct 117959 TCGAGCTGCTTTCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCC 117900 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | ||||||| | || || | |||||| ||| Sbjct 117899 TGAATCTTCGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTT 117840 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||| ||||| |||||||| Sbjct 117839 TTACCGGTTAGGGTTTTCACAAAGATCTGCAT 117808 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||| || || | ||| | | || Sbjct 118247 AGCACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGCTAGGGTACGGCCATCT 118188 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| |||||||| ||| | || | || ||| || || || | |||||||| || Sbjct 118187 TCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCTTTATCC 118128 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | |||||| | || ||| | |||||| ||| Sbjct 118127 TGAATCTTCGCCTTAACGTTGTCAATTGTGTCGGAGCTTTCGACTTCAAGGGTGATTGTT 118068 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||||||||| || ||||| Sbjct 118067 TTCCCGGTTAGGGTTTTGACAAAGATTTGCAT 118036 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || || |||||||| || |||||||| || || Sbjct 118491 CCCGCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 118432 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | |||| || | ||| || || ||| | || |||| || ||||| || Sbjct 118431 GAGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGG 118372 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| ||| | ||| || | | | | |||||| | ||| Sbjct 118371 AATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCCAC 118312 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||||| || |||| || || ||||||||||||||| Sbjct 118311 CTCCAAAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAAATCTGCATT 118263 >seq51452 Length=252770 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 |||||||| || | ||| || || |||||||| || || ||||| || || | || | Sbjct 3848 AGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGTGTCCTA 3907 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | |||||||| || || || ||| | ||||||| ||| ||||| || | |||||| Sbjct 3908 CCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATGCCCTCC 3967 Query 16838 TTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGG 16895 || || ||| |||| |||||| | | | | ||||| | ||| ||| | | Sbjct 3968 TTATCCTGAATCTTTGC--CTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCTAATG 4025 Query 16896 TGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||||||||||| || | ||||| ||||| || |||||| Sbjct 4026 TGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 4066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || | |||||| || || | || || || ||||||||||| || || || || || Sbjct 4751 CCACCCCTTAGCCTGAGAACTAGGTGGAGAGTTGACTCCTTTTGAATATTATAATCTGCG 4810 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || |||| ||| || || ||| | || |||| ||| || ||| || Sbjct 4811 AGAGTACGCCCATCTTCCAGTTGCTTCCCTGCAAATATCAGCCTCTGCTGATCCGGTGGG 4870 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT--CCG 16886 | ||||| ||||| |||| | ||| || | | | | ||||| || ||| | Sbjct 4871 ATACCCTCCTTGTCTTGTATTTTCGCCTTAACATTGTCTATGGTGTC--CGAGCTTTCAA 4928 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||||||||| || || ||||| ||||| |||||||| Sbjct 4929 CTTCCAGTGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAGATCTGCAT 4977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404825706532720