Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06]
53,128 sequences; 1,222,768,627 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq44697 181 1e-40
seq38302 176 5e-39
seq15208 91.5 2e-13
seq47959 89.7 6e-13
seq35582 89.7 6e-13
seq31384 89.7 6e-13
seq876 86.0 7e-12
seq48572 84.2 2e-11
seq8811 84.2 2e-11
seq51861 82.4 8e-11
seq50003 82.4 8e-11
seq49140 82.4 8e-11
seq48573 82.4 8e-11
seq21698 82.4 8e-11
seq9211 82.4 8e-11
>seq44697
Length=182102
Score = 181 bits (200), Expect = 1e-40
Identities = 590/901 (65%), Gaps = 28/901 (3%)
Strand=Plus/Plus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
||||||| | ||||| || ||||||||| | || ||||||||||| ||||| ||||
Sbjct 112967 CATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 113026
Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907
||| ||| | || | | | ||||||| || || || |||| |||
Sbjct 113027 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACC 113086
Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967
||| | | ||| ||||||||||| |||||||| ||||| | ||||||||| | |||
Sbjct 113087 CAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATT 113146
Query 92968 CATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026
|||||| | || || ||| || || || || || || || | || || | || |
Sbjct 113147 CATTCCCACCAG-CGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAG 113205
Query 93027 CTTCTTTCAAGATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGT 93083
| ||| ||| | ||| ||| ||| | | || || || | ||| || | |
Sbjct 113206 CATCTG-CAACAATTCCCTTAACTCGT-TCCTCAGTAAGCTTCGTCCTTAACA-AACTAT 113262
Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143
| | || || ||||| || || ||||||||||| | || || ||||| || ||
Sbjct 113263 AAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGA 113322
Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203
| ||||| || || | | || || || || | ||| ||||| | | ||| || || |
Sbjct 113323 AGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGG 113382
Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263
| ||||| ||||||||||| |||||||| || | ||| || ||||| || ||||
Sbjct 113383 AGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGA-- 113440
Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323
|| | |||||| || ||||| | || || |||| || ||| || | || || |
Sbjct 113441 -ACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAA 113499
Query 93324 TAGCGTTAAATAGGTAATCTCGC-----TCGTCCGAATCTCGTATGTATGTATCGATTAA 93378
||| || |||||| || ||||| || || ||||| | || | |
Sbjct 113500 CTGCGCGGAA----TAATCT-GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAG 113554
Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438
|||| ||||| || || |||| || || || || |||||||| ||||||||| |
Sbjct 113555 CAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACG 113614
Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498
|| || | | || ||||||| || || | | || ||||| || || ||
Sbjct 113615 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 113674
Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558
|| || || |||||||| || | | || | || ||||| | ||| | | | ||
Sbjct 113675 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 113734
Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616
| ||||| | ||| | ||| || | |||||||||||| ||||||| || ||
Sbjct 113735 GGTTTCCCAGTGACGGTT--ATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAG 113792
Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676
||| |||||||||||||| ||||| || | | | ||||||||||| || || ||| ||
Sbjct 113793 GCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACAT-ACAGAA 113851
Query 93677 C 93677
|
Sbjct 113852 C 113852
>seq38302
Length=59671
Score = 176 bits (194), Expect = 5e-39
Identities = 589/901 (65%), Gaps = 28/901 (3%)
Strand=Plus/Plus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
||||||| | ||||| || ||||||||| | || ||||||||||| ||||| ||||
Sbjct 22787 CATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 22846
Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907
||| ||| | || | | | ||||||| || || || |||| | |
Sbjct 22847 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACC 22906
Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967
||| | | ||| ||||||||||| |||||||| ||||| | ||||||||| | |||
Sbjct 22907 CAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATT 22966
Query 92968 CATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026
|||||| | || || ||| || || || || || || || | || || | || |
Sbjct 22967 CATTCCCACCAG-CGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAG 23025
Query 93027 CTTCTTTCAAGATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGT 93083
| ||| ||| | | | ||| ||| | | || || || | ||| || | |
Sbjct 23026 CATCTG-CAACAATCCCCTTAACTCGT-TCCTCAGTAAGCTTCGTCCTCAACA-AACTAT 23082
Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143
| | || || || || || || ||||||||||| | ||| || ||||| || ||
Sbjct 23083 AAAGCAAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGA 23142
Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203
| ||||| || || | | || || || || | ||| ||||| | | ||| || ||||
Sbjct 23143 AAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCAG 23202
Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263
| ||||| ||||||||||| | |||||| || | ||| || ||||| || ||||
Sbjct 23203 AGAAAAAAATACCTTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGA-- 23260
Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323
|| | |||||| || ||||| | || || |||| || ||| || | || || |
Sbjct 23261 -ACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAA 23319
Query 93324 TAGCGTTAAATAGGTAATCTCGC-----TCGTCCGAATCTCGTATGTATGTATCGATTAA 93378
||| || |||||| || ||||| || || ||||| | || | |
Sbjct 23320 CTGCGCGGAA----TAATCT-GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAG 23374
Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438
|||| ||||| || || |||| || || || || |||||||| ||||||||| |
Sbjct 23375 CAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACG 23434
Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498
|| || | | || ||||||| || ||| | | || ||||| || || ||
Sbjct 23435 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCC 23494
Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558
|| || || |||||||| || | | || | || ||||| | ||| | | | ||
Sbjct 23495 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 23554
Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616
| ||||| | ||| | ||| || | |||||||||||| ||||||| || ||
Sbjct 23555 GGTTTCCCAGTGACGGGT--ATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAG 23612
Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676
||| |||||||||||||| ||||| || | | | ||||||||||| || || ||| ||
Sbjct 23613 GCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACAT-ACAGAA 23671
Query 93677 C 93677
|
Sbjct 23672 C 23672
>seq15208
Length=163796
Score = 91.5 bits (100), Expect = 2e-13
Identities = 75/90 (83%), Gaps = 6/90 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 148692 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 148749
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351
||||||||| || ||||| ||||||||||
Sbjct 148750 CGTGGGTTCAAATCCCACTTCTGACAAATT 148779
>seq47959
Length=166657
Score = 89.7 bits (98), Expect = 6e-13
Identities = 78/96 (81%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 106464 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 106407
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||| || ||||| ||||||| || || ||
Sbjct 106406 CGTGGGTTCAAATCCCACTTCTGACAATTTCTTTTT 106371
>seq35582
Length=112195
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/91 (82%), Gaps = 6/91 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 37538 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 37595
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351
|||||||||| || ||||| ||||||| ||
Sbjct 37596 GCGTGGGTTCAAATCCCACTTCTGACAATTT 37626
>seq31384
Length=88871
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/91 (82%), Gaps = 6/91 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 52851 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 52794
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351
|||||||||| || ||||| ||||||| ||
Sbjct 52793 GCGTGGGTTCAAATCCCACTTCTGACAATTT 52763
>seq876
Length=23407
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/87 (83%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 22584 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 22527
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 22526 GCGTGGGTTCAAATCCCACTTCTGACA 22500
>seq48572
Length=144118
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 36651 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 36594
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348
|||||||||| || ||||| |||||||
Sbjct 36593 GCGTGGGTTCAAATCCCACTTCTGACAA 36566
>seq8811
Length=181991
Score = 84.2 bits (92), Expect = 2e-11
Identities = 83/106 (78%), Gaps = 6/106 (6%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 168220 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 168277
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
|||||||||| || ||||| ||||||| || | ||| |||||
Sbjct 168278 GCGTGGGTTCAAATCCCACTTCTGACAATATAATTTTGTTGTTTTT 168323
>seq51861
Length=44580
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 19531 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 19474
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 19473 GCGTGGGTTCAAATCCCACTTCTGACA 19447
>seq50003
Length=133231
Score = 82.4 bits (90), Expect = 8e-11
Identities = 80/101 (79%), Gaps = 4/101 (4%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 18506 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 18563
Query 126328 TTCGAACCCCACACCTG--ACAAATTATTATTGGAATTTTT 126366
||| || |||||| ||| ||| |||| | | | ||||||
Sbjct 18564 TTCAAATCCCACAGCTGTCACAGTTTATCAGTTGCATTTTT 18604
>seq49140
Length=44374
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | |
Sbjct 32920 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGGG 32863
Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348
||||||||| || ||||| |||||||
Sbjct 32862 CGTGGGTTCAAATCCCACTTCTGACAA 32836
>seq48573
Length=61221
Score = 82.4 bits (90), Expect = 8e-11
Identities = 68/82 (83%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 33629 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 33686
Query 126328 TTCGAACCCCACACCTGACAAA 126349
||| || |||||| ||| ||||
Sbjct 33687 TTCAAATCCCACAGCTGTCAAA 33708
>seq21698
Length=78680
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 5126 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 5069
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 5068 GCGTGGGTTCAAATCCCACTTCTGACA 5042
>seq9211
Length=285254
Score = 82.4 bits (90), Expect = 8e-11
Identities = 83/105 (79%), Gaps = 5/105 (5%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 62151 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 62208
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
|||||| || |||||| ||| | |||||| ||| | || || ||
Sbjct 62209 GGGTTCAAATCCCACAGCTGTC--ATTATT-TTGTATTTATTTTT 62250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556490988742720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |