Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20obtusifolia_20[genbank_20GCA_5F002018475.1_202017-03-06] 53,128 sequences; 1,222,768,627 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq44697 181 1e-40 seq38302 176 5e-39 seq15208 91.5 2e-13 seq47959 89.7 6e-13 seq35582 89.7 6e-13 seq31384 89.7 6e-13 seq876 86.0 7e-12 seq48572 84.2 2e-11 seq8811 84.2 2e-11 seq51861 82.4 8e-11 seq50003 82.4 8e-11 seq49140 82.4 8e-11 seq48573 82.4 8e-11 seq21698 82.4 8e-11 seq9211 82.4 8e-11 >seq44697 Length=182102 Score = 181 bits (200), Expect = 1e-40 Identities = 590/901 (65%), Gaps = 28/901 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||||| || ||||||||| | || ||||||||||| ||||| |||| Sbjct 112967 CATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 113026 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| ||| | || | | | ||||||| || || || |||| ||| Sbjct 113027 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACC 113086 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 ||| | | ||| ||||||||||| |||||||| ||||| | ||||||||| | ||| Sbjct 113087 CAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATT 113146 Query 92968 CATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||||| | || || ||| || || || || || || || | || || | || | Sbjct 113147 CATTCCCACCAG-CGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAG 113205 Query 93027 CTTCTTTCAAGATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGT 93083 | ||| ||| | ||| ||| ||| | | || || || | ||| || | | Sbjct 113206 CATCTG-CAACAATTCCCTTAACTCGT-TCCTCAGTAAGCTTCGTCCTTAACA-AACTAT 113262 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 | | || || ||||| || || ||||||||||| | || || ||||| || || Sbjct 113263 AAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTAGAAATTAACTCGTTCGAGA 113322 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | ||||| || || | | || || || || | ||| ||||| | | ||| || || | Sbjct 113323 AGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCGG 113382 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | ||||| ||||||||||| |||||||| || | ||| || ||||| || |||| Sbjct 113383 AGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGA-- 113440 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || | |||||| || ||||| | || || |||| || ||| || | || || | Sbjct 113441 -ACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAA 113499 Query 93324 TAGCGTTAAATAGGTAATCTCGC-----TCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| || |||||| || ||||| || || ||||| | || | | Sbjct 113500 CTGCGCGGAA----TAATCT-GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAG 113554 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 |||| ||||| || || |||| || || || || |||||||| ||||||||| | Sbjct 113555 CAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACG 113614 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | | || ||||||| || || | | || ||||| || || || Sbjct 113615 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 113674 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || || || |||||||| || | | || | || ||||| | ||| | | | || Sbjct 113675 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 113734 Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | ||||| | ||| | ||| || | |||||||||||| ||||||| || || Sbjct 113735 GGTTTCCCAGTGACGGTT--ATCAGAAGACAAATCGACTTCTTCAGCAGTCCAGAAAGAG 113792 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 ||| |||||||||||||| ||||| || | | | ||||||||||| || || ||| || Sbjct 113793 GCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACAT-ACAGAA 113851 Query 93677 C 93677 | Sbjct 113852 C 113852 >seq38302 Length=59671 Score = 176 bits (194), Expect = 5e-39 Identities = 589/901 (65%), Gaps = 28/901 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||||| || ||||||||| | || ||||||||||| ||||| |||| Sbjct 22787 CATAACAGAAGCCTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 22846 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| ||| | || | | | ||||||| || || || |||| | | Sbjct 22847 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATTATAACC 22906 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 ||| | | ||| ||||||||||| |||||||| ||||| | ||||||||| | ||| Sbjct 22907 CAAAGCATCCAACAATCTATCAGCCACAAATTCAATGTATTTGCTCATCAAATCTCCATT 22966 Query 92968 CATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||||| | || || ||| || || || || || || || | || || | || | Sbjct 22967 CATTCCCACCAG-CGCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAG 23025 Query 93027 CTTCTTTCAAGATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGT 93083 | ||| ||| | | | ||| ||| | | || || || | ||| || | | Sbjct 23026 CATCTG-CAACAATCCCCTTAACTCGT-TCCTCAGTAAGCTTCGTCCTCAACA-AACTAT 23082 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 | | || || || || || || ||||||||||| | ||| || ||||| || || Sbjct 23083 AAAGCAAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGA 23142 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | ||||| || || | | || || || || | ||| ||||| | | ||| || |||| Sbjct 23143 AAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAAAAGCTTCCAG 23202 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | ||||| ||||||||||| | |||||| || | ||| || ||||| || |||| Sbjct 23203 AGAAAAAAATACCTTCCACACAAGAAAATGCAACCAAACGCTCCGCAAATGTTTCGGA-- 23260 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || | |||||| || ||||| | || || |||| || ||| || | || || | Sbjct 23261 -ACCGTCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGAATAGTCTCAA 23319 Query 93324 TAGCGTTAAATAGGTAATCTCGC-----TCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| || |||||| || ||||| || || ||||| | || | | Sbjct 23320 CTGCGCGGAA----TAATCT-GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAG 23374 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 |||| ||||| || || |||| || || || || |||||||| ||||||||| | Sbjct 23375 CAGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACG 23434 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | | || ||||||| || ||| | | || ||||| || || || Sbjct 23435 GGCCTCGGCAACTTGGACTTCTTTCATGAACCTCCCGGCTAGGTTTTCTAAAACGATGCC 23494 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || || || |||||||| || | | || | || ||||| | ||| | | | || Sbjct 23495 GTCTGAGGCGGCAAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGTGTTAG 23554 Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | ||||| | ||| | ||| || | |||||||||||| ||||||| || || Sbjct 23555 GGTTTCCCAGTGACGGGT--ATCGGAAGATAAATCGACTTCTTCCGCAGTCCAGAAAGAG 23612 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 ||| |||||||||||||| ||||| || | | | ||||||||||| || || ||| || Sbjct 23613 GCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACAT-ACAGAA 23671 Query 93677 C 93677 | Sbjct 23672 C 23672 >seq15208 Length=163796 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 148692 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 148749 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| |||||||||| Sbjct 148750 CGTGGGTTCAAATCCCACTTCTGACAAATT 148779 >seq47959 Length=166657 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 106464 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 106407 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||||| || || || Sbjct 106406 CGTGGGTTCAAATCCCACTTCTGACAATTTCTTTTT 106371 >seq35582 Length=112195 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 37538 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 37595 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 37596 GCGTGGGTTCAAATCCCACTTCTGACAATTT 37626 >seq31384 Length=88871 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 52851 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 52794 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 52793 GCGTGGGTTCAAATCCCACTTCTGACAATTT 52763 >seq876 Length=23407 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 22584 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 22527 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 22526 GCGTGGGTTCAAATCCCACTTCTGACA 22500 >seq48572 Length=144118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 36651 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 36594 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 36593 GCGTGGGTTCAAATCCCACTTCTGACAA 36566 >seq8811 Length=181991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 6/106 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 168220 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 168277 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||||| || | ||| ||||| Sbjct 168278 GCGTGGGTTCAAATCCCACTTCTGACAATATAATTTTGTTGTTTTT 168323 >seq51861 Length=44580 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 19531 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 19474 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 19473 GCGTGGGTTCAAATCCCACTTCTGACA 19447 >seq50003 Length=133231 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 18506 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 18563 Query 126328 TTCGAACCCCACACCTG--ACAAATTATTATTGGAATTTTT 126366 ||| || |||||| ||| ||| |||| | | | |||||| Sbjct 18564 TTCAAATCCCACAGCTGTCACAGTTTATCAGTTGCATTTTT 18604 >seq49140 Length=44374 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 32920 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGGG 32863 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 32862 CGTGGGTTCAAATCCCACTTCTGACAA 32836 >seq48573 Length=61221 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 33629 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 33686 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 33687 TTCAAATCCCACAGCTGTCAAA 33708 >seq21698 Length=78680 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 5126 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 5069 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 5068 GCGTGGGTTCAAATCCCACTTCTGACA 5042 >seq9211 Length=285254 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/105 (79%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 62151 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 62208 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| | |||||| ||| | || || || Sbjct 62209 GGGTTCAAATCCCACAGCTGTC--ATTATT-TTGTATTTATTTTT 62250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556490988742720